Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2588 ATGGCCAACTTGCTACATAACGGTGCATTGTCTTCTGGTTTCCCATCCTTATCCACTCTCAGAGCCATGCATAAAGGAAAACACATTGAGCTTAAGAGAATGGCTGTGGTGATAAAGGCAAAGTATAACAGCGATTTTGATGACTCGGGCGTTGATATTTCTTTGAGTCACAGAGTTGATGCTGTGAAGCCTTCCAAAACTCTAGCCATATGTGATCATGCCACTGCTCTTTTACAATCCGGAGTTCCTGTTATTCGCTTATTTTTTGGAGAATCTGATTTTGACACACCTGCTGTTATAGCTGAGGCTGGGATGAATGCAATTCGTGATGGTCACACCAGATATACCCCCAATGCTGGAACAGTAGAATTGCGCCAAGCAATATGTCACAAGCTAAAAGAGGAGAATGGAATTATATATTCTCCTGATCAGATTGTGGTCAGCAATGGAGCCAAGCAAAGTATTGTTCAAGCAGTGCTTGCAGTTTGTTCCCCAGGAGACGAGGTTATTATTCCAGCTCCCTTCTATGTGAGTTACCCAGAAATGGCAAGACTGGCTCATGCAACACCTGTGATTCTTCCAACCCACATATTGAATAATTTTATTTTGGACCCCAAACTGCTAGAAGACAACCTTACAGAAAGATCCAGACTGCTTATTCTTTGTTCACCCTGTAACCCAACAGGGTCTGTCTATCCTAAGAAATTACTTGAAGAGATAGCTCAAATTGTAGCAAAGCACCCTAGGCTTCTGGTTCTTTCTGATGAAAATTATGAACACATAATTTATGCACCAGCAACTCATACAAGTTTTGCATCTTTACCCGGAATGCAGGACAGAACTCTAACTGTGAATGGACTTTCCAAGACATTTGCAATGACTGGTTGGCGGCTCGGGTATATTGCTGGTCCAAAGCATTTTGTTGCAGCATGTGGAAAGATTCAAAGCCAGTTTACTTCAGGAGCAAGTAGTATATCTCAGAAAGCTGCAGTTGCTGCATTAGGATTAGGCTATGGAGGGGGAGAAGCTGTTTCTAACATGGTGAAAGCTTTCAGGGAAAGAAGAGATTTCTTGGTTGAAAGCTTTAGAGATGTGGATGGAGCGAGAATATGTGAACCACAGGGGGGATTCTATGTATTCATTGATTTGAGTTCTTATTATGGAAGAGAAGCTGAAGGCTTCGGCTTAATTGAAAATTCTGACTCCCTCTGTGGCTATCTGCTGGAGAAGGGCCAGGTTGCTTTGGTTCCAGGGAGTGCATTTGGAGATGATTCTTGCATCAGAATCTCTTTTGCAGAATCCCTTTCTACTTTAAACACAGCAGTTGAGAGAATTAAGAAAGCTCTGTCATTCCTCTAA 1359 0.4231 MANLLHNGALSSGFPSLSTLRAMHKGKHIELKRMAVVIKAKYNSDFDDSGVDISLSHRVDAVKPSKTLAICDHATALLQSGVPVIRLFFGESDFDTPAVIAEAGMNAIRDGHTRYTPNAGTVELRQAICHKLKEENGIIYSPDQIVVSNGAKQSIVQAVLAVCSPGDEVIIPAPFYVSYPEMARLAHATPVILPTHILNNFILDPKLLEDNLTERSRLLILCSPCNPTGSVYPKKLLEEIAQIVAKHPRLLVLSDENYEHIIYAPATHTSFASLPGMQDRTLTVNGLSKTFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSISQKAAVAALGLGYGGGEAVSNMVKAFRERRDFLVESFRDVDGARICEPQGGFYVFIDLSSYYGREAEGFGLIENSDSLCGYLLEKGQVALVPGSAFGDDSCIRISFAESLSTLNTAVERIKKALSFL* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2588 452 Pfam Aminotransferase class I and II 84 445 IPR004839 GO:0009058|GO:0030170
Pvu1g2588 452 PANTHER GLUTAMATE-OXALOACETATE TRANSAMINASE5 48 452 - -
Pvu1g2588 452 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 48 452 - -
Pvu1g2588 452 Gene3D Aspartate Aminotransferase, domain 1 68 443 IPR015422 GO:0003824
Pvu1g2588 452 CDD AAT_like 85 447 - -
Pvu1g2588 452 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 286 299 IPR004838 GO:0003824|GO:0009058|GO:0030170
Pvu1g2588 452 Gene3D - 114 336 IPR015421 GO:0003824
Pvu1g2588 452 SUPERFAMILY PLP-dependent transferases 55 449 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2588 Pvu-Chr1 50825865 50829734 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2588 K15849 - gmx:100780254 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2588 1 50825865 50829734 Pvu1g2588 1 50825865 50829734 ECH
Pvu2g2696 2 42850382 42854039 Pvu1g2588 1 50825865 50829734 PCT