Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2587 ATGGAATCGGAATCTGAAATCACCGATTCTCAACCGCACCCTCTCTCGAACCAAATTGTGGACGCGTGCCACGACATGAATTCCCTTGAAGACCTCGCGAACCGCGGCGCGTGGCGTTCAATCATCGACAAGGTCTCCCGCGCCCGCGCTCTGTCTCTCCTCCACAAGCCCCACGACCACCTCACCTACCTCGCCTTCAACGCCCTCGCATTCACAAAACTGCGTCGTTTCAACGAAGCCTCCGCGGAACTCGATTCCCTCGAAGACCTCGACAGTTCCCACTACCAGTACGAAACCTACCCCAAAATCTACCCGAACCGGGTCGGATCAATGGTCCCTTTCTCCCTACGGTGGCTCCACGCCCTAATTCCAATCAAATTAGGGCAACGTCAGCAGGGCATGGATCGCTTTTACACACTCCTTGATTTCGTGCGCGGGAAGATTAGGGAAAAGGGGAATGACAACAAGCTAGGCGTCTCCCTCAAACTGTGGCGAAAACGAGAGGTTTTTGTCGTGAATTGCATAATAGGGCACCATTTGAGTCAGAAAGAATTCGGCGTGTGTTTGAGTTTGATGAAGGAGCTTCTCTCTCGCGATGATGGTTCGGACCCTGTGTTGGTTTCGCAACTTGGGTATATGCAGTTGCAGATTGGGGACTTGGAGGGTGCGAAAGTTTCTTTTTTGAAGGTGGAGAGTGAGGGAAAGAATAATGGGTCGTTGAGCGAGGTTGAGTTTAACAACCTTGTGAATAGGAACAAGGCGTTGGTGTATTTGGTTGGTAAGGACTATGTGTCGGCGGTGAGGGAGTACGAGGAGTGCATTGAGAGGGACAGCGCAGATATCGTGGCTGTGAATAACAAGGCTCTGTGTTTGATGTATCTTAGGGACTTGTCGGATTCTATAAAGGTGTTGGAGAGTGCGCTTGAGAGAGTTCCCACTGTGGCTCTCAACGAGACGCTTGTTGTCAATTTGTGTAGTATGTATGAATTGGCGTATGTTAATCACTCTGATATTAAGAGAACGCTTAGTAATTGGATTGCTCGTGTTGCACCGGATGATTTTGATGCATCTTGTACTCGTACATGA 1086 0.4982 MESESEITDSQPHPLSNQIVDACHDMNSLEDLANRGAWRSIIDKVSRARALSLLHKPHDHLTYLAFNALAFTKLRRFNEASAELDSLEDLDSSHYQYETYPKIYPNRVGSMVPFSLRWLHALIPIKLGQRQQGMDRFYTLLDFVRGKIREKGNDNKLGVSLKLWRKREVFVVNCIIGHHLSQKEFGVCLSLMKELLSRDDGSDPVLVSQLGYMQLQIGDLEGAKVSFLKVESEGKNNGSLSEVEFNNLVNRNKALVYLVGKDYVSAVREYEECIERDSADIVAVNNKALCLMYLRDLSDSIKVLESALERVPTVALNETLVVNLCSMYELAYVNHSDIKRTLSNWIARVAPDDFDASCTRT* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2587 361 Gene3D Tetratricopeptide repeat domain 171 343 IPR011990 GO:0005515
Pvu1g2587 361 PANTHER F-BOX DOMAIN, TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN PROTEIN-RELATED 11 360 - -
Pvu1g2587 361 PANTHER D-ALANYL-D-ALANINE CARBOXYPEPTIDASE 11 360 - -
Pvu1g2587 361 SMART tpr_5 204 237 IPR019734 GO:0005515
Pvu1g2587 361 SMART tpr_5 247 280 IPR019734 GO:0005515
Pvu1g2587 361 SMART tpr_5 281 314 IPR019734 GO:0005515
Pvu1g2587 361 SUPERFAMILY TPR-like 200 316 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2587 K20309 - gmx:100779691 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2587 1 50820578 50821970 Pvu1g2587 1 50820578 50821970 ECH