Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2583 ATGTCGCCAAAATATCAGAGTTTGGACAATCGTCCTATTCATCAGTGGAAGGTTACGGAGCTGAGAGATGAGCTGAGGAGAAGGAGGTTAAGCGCCAAAGGTTTGAAGGACGATTTGGTCAAACGTTTGGATGAATGCCTTCGTCTTGAAAGGGAGGCTGAGGAGGATTCTGAGAAAGAGGATGAGAAGGAGGAGGCCAATGGTTTTGATGATGATCATGCAGATGGGGAAAAACAGCCTGAGGCAGTTACTGTGGATGCTGAAGTGGTTGACGCAACTGAGAAGGAAAACACCCAAAAATTTGAGACTGCTGAAAAGGGGAAGAGTGATGTAGTTGAACCGATTGAAACAGAAAATGTTGAAAAGGTTCCAGAGGTTGTGGATCAAGACAGCAATAAGAACGACAAGCAGGATGGTGTTACTGGCCAAGTTGACATTAAAACTAGTGTGTCAACCATGGATGAAGAAGTTGAACATGAGGAATTGCCCTCCGGTGTAGATTCTGGAAATGTGGTAGAGGAGACAAGTACTTATGCTTCTACTGTAGAAACCACAATTACAGTCACTGAAAGTGTGGTAACAGGAGTGGTAGCCAGTAATGAGGATTCATATAATGCAGAAAAGAATAATGAGATTTCTGCAGCAAAGCTGGAGAATGAGGAGTCAAAGGCGCAGCTGGATGGTGAGGATACAAAGCCCCAACTGGATTCTGAGACAAAGCCCCTGCACGAGGATCCTGTGCCCGACTCTTCTGTTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTATTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAAGCCGGAGATGGTGGAAGAACCATCATCCAGAAATGATGTACCTGTTTCTTATGATGAATCACATTCAATGGATGTTGGAGGGCGGCATGAGAAAAAGACATCTGTTGAAGAAAATATCAATAATGTTTCAAGTCCAGACTTGAACAAGACCAATAGCAGTGATGATGTGGGGTATCCAGAAAAGTTGAATTTAGACAGAAGTTCTGGTGATGATTCCATGGAAGAGGATTTGCCTGAGACTAAGCAAATTGATTCTAAGTTTAATGTTGATGAACTTAGAGAGAAAGTGGAGAGTATTGAAGAGCCTATTGTGAAGGAGGAAAGTAGGACTATAGCTGTGGGAGATGGTGTATCTGGAGGAAAAATGGATACCCTCCAAGATATTGACATTAGTCCTGTTGCCCCAACTGAGAAACGAAAATTCCATGAACAAGCATCGGTTGGGAGCAGTGAGCCTGCAAAAAGGCAACGCAGGTGGAACACTGAAACAGTTAAAGGTGGTCCAGATCCACAAAGCACTACTCCCAGGCCTGCTACTACACCTAGAGATGAGCCAATAGCTCTGAAACGCAACCTCTCTAGGTCTGATTCCTCTGCTACTGATGACACACCTAAAGAGCGCATTGTTCCACCATCACAAAGGTCCCCAACTAATTCCCTCAGGATTGATCGTTTCCTCCGTCCATTCACTCTGAAAGCTGTGCAAGAACTTCTCGGAAAGACTGGGAATGTCAGCAGTTTCTGGATGGACCAAATAAAGACCCATTGCTATGTTACTTACTCGTCTGTCGAAGAAGCCATGGAGACACGGAATGCTGTGTATAATTTGCAATGGCCACCAAATGGTGGGCGACTCTTAGTTGCCGAGTATGTTGATCCTGAAGAAGTGAAAATGAAGTTAGAACCTCCTTCACAGGCTGCCCCCATCAGCACTGCTGTAGTTCAGCCTGTGCCCACCACACCACAGCCAGAGCCTTCCCCTCGACTACACAGGGAGCAGCATTCAGTTCCAACTACGCTCCCACCTCCACCACCATTGTCAAAACCCCCACCAGTAGCAAGAGATCGGCTTCCATCACCACCACCCCTTCCAGAGAAAGTTGACCCACCTATTGTCACTCTGGATGATCTCTTCCGCAAAACCATAGCAACTCCTCGGATTTACTACTTGCCTTTATCCGAAGAGCAGGTTGCTGCAAAGGGTAAAAGCATGAGGCAGTAG 2130 0.4484 MSPKYQSLDNRPIHQWKVTELRDELRRRRLSAKGLKDDLVKRLDECLRLEREAEEDSEKEDEKEEANGFDDDHADGEKQPEAVTVDAEVVDATEKENTQKFETAEKGKSDVVEPIETENVEKVPEVVDQDSNKNDKQDGVTGQVDIKTSVSTMDEEVEHEELPSGVDSGNVVEETSTYASTVETTITVTESVVTGVVASNEDSYNAEKNNEISAAKLENEESKAQLDGEDTKPQLDSETKPLHEDPVPDSSVPENQVSEVNPSLGSQVKSDSISTDSVSINQKNELKDTIITDNVKLEQDIVKPEMVEEPSSRNDVPVSYDESHSMDVGGRHEKKTSVEENINNVSSPDLNKTNSSDDVGYPEKLNLDRSSGDDSMEEDLPETKQIDSKFNVDELREKVESIEEPIVKEESRTIAVGDGVSGGKMDTLQDIDISPVAPTEKRKFHEQASVGSSEPAKRQRRWNTETVKGGPDPQSTTPRPATTPRDEPIALKRNLSRSDSSATDDTPKERIVPPSQRSPTNSLRIDRFLRPFTLKAVQELLGKTGNVSSFWMDQIKTHCYVTYSSVEEAMETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEPPSQAAPISTAVVQPVPTTPQPEPSPRLHREQHSVPTTLPPPPPLSKPPPVARDRLPSPPPLPEKVDPPIVTLDDLFRKTIATPRIYYLPLSEEQVAAKGKSMRQ* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2583 709 MobiDBLite consensus disorder prediction 251 288 - -
Pvu1g2583 709 MobiDBLite consensus disorder prediction 340 360 - -
Pvu1g2583 709 MobiDBLite consensus disorder prediction 362 386 - -
Pvu1g2583 709 MobiDBLite consensus disorder prediction 289 310 - -
Pvu1g2583 709 CDD RRM_ACINU 520 604 IPR034257 -
Pvu1g2583 709 MobiDBLite consensus disorder prediction 640 671 - -
Pvu1g2583 709 ProSiteProfiles SAP motif profile. 13 47 IPR003034 -
Pvu1g2583 709 MobiDBLite consensus disorder prediction 50 144 - -
Pvu1g2583 709 SUPERFAMILY RNA-binding domain, RBD 514 602 IPR035979 GO:0003676
Pvu1g2583 709 Pfam SAP domain 15 44 IPR003034 -
Pvu1g2583 709 SUPERFAMILY SAP domain 13 50 IPR036361 -
Pvu1g2583 709 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 707 - -
Pvu1g2583 709 MobiDBLite consensus disorder prediction 325 339 - -
Pvu1g2583 709 MobiDBLite consensus disorder prediction 434 524 - -
Pvu1g2583 709 MobiDBLite consensus disorder prediction 604 675 - -
Pvu1g2583 709 MobiDBLite consensus disorder prediction 69 135 - -
Pvu1g2583 709 Pfam RNSP1-SAP18 binding (RSB) motif 669 706 IPR032552 -
Pvu1g2583 709 MobiDBLite consensus disorder prediction 490 506 - -
Pvu1g2583 709 Gene3D SAP domain 13 65 IPR036361 -
Pvu1g2583 709 Coils Coil 36 66 - -
Pvu1g2583 709 SMART sap_9 13 47 IPR003034 -
Pvu1g2583 709 MobiDBLite consensus disorder prediction 214 247 - -
Pvu1g2583 709 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 707 - -
Pvu1g2583 709 MobiDBLite consensus disorder prediction 468 482 - -
Pvu1g2583 709 Coils Coil 205 225 - -
Pvu1g2583 709 MobiDBLite consensus disorder prediction 214 386 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2583 K12875 - gmx:100786288 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2583 1 50787820 50791707 Pvu1g2583 1 50787820 50791707 ECH