Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2582 ATGGACGGTGAGGATGCTCCGAAACCAGTGGTTATCATCACAGGATGTTCCACGGGAGGGATAGGCCACGCGCTTGCGTGCGCGTTCGCGGAGAAGAAGTGCAAGGTGGTGGCGACGAGTAGGTCGCGGTCGAGCATGGCGGAGCTGGAACACGACCACAGGTTTTTGTTGGAAGAGTTGGATGTTCAGTCCGATGAGAGCGTGAGCAGAGTGGTTGACGCTGTTGTCCAAACGTACGGTCGCATCGACGTGCTCGTTAACAACGCGGGGATTCAGTGCGTGGGCCCACTCGCCGAGGTTCCTCTCTCTTCCATCCAAAACACTTTCGACACCAATGTATTCGGTTCCTTGAGAATGGTTCAGGCGGTTGTTCCTCATATGGCAACTAGGAAAAAGGGGAAGATTGTGAATATTGGTAGTGTTGCTGCCTTGGCTTCTGGACCTTGGTCAGGCACTTATACAGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATACATTAAGAATGGAACTTGGACATTTTGGAATTGATGTTGTGAATGTTCTCCCCGGAGCTATAAAATCAAATATTGGAGATTCTGCCGTAGCCAGCTACAACCGCATGCCGGAATGGAAATTGTTCAAGCCTTTTGAAGCAGCAATCAGAGACAGAGCTTACTTTTCTCAGAAGTCGAAATCAACTCCGACATATGAGTTTGCTAAAAACACTGTAGCTGCTATTCTTAAGGAGAAACCGCCGGCATGGTTTACCTATGGACATTACTCTACTGTCATGGCTATCATGTACCATTTACCAATCTCTGTTAGAGATTTTATTTTGAAGAAAGCAATGAAAGGCTGA 840 0.4774 MDGEDAPKPVVIITGCSTGGIGHALACAFAEKKCKVVATSRSRSSMAELEHDHRFLLEELDVQSDESVSRVVDAVVQTYGRIDVLVNNAGIQCVGPLAEVPLSSIQNTFDTNVFGSLRMVQAVVPHMATRKKGKIVNIGSVAALASGPWSGTYTASKAALHALTDTLRMELGHFGIDVVNVLPGAIKSNIGDSAVASYNRMPEWKLFKPFEAAIRDRAYFSQKSKSTPTYEFAKNTVAAILKEKPPAWFTYGHYSTVMAIMYHLPISVRDFILKKAMKG* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2582 279 Pfam short chain dehydrogenase 10 194 IPR002347 -
Pvu1g2582 279 Gene3D - 9 269 - -
Pvu1g2582 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 IPR002347 -
Pvu1g2582 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 IPR002347 -
Pvu1g2582 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 IPR002347 -
Pvu1g2582 279 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 140 168 IPR020904 GO:0016491
Pvu1g2582 279 PRINTS Glucose/ribitol dehydrogenase family signature 11 28 IPR002347 -
Pvu1g2582 279 PRINTS Glucose/ribitol dehydrogenase family signature 80 91 IPR002347 -
Pvu1g2582 279 PRINTS Glucose/ribitol dehydrogenase family signature 127 143 IPR002347 -
Pvu1g2582 279 PRINTS Glucose/ribitol dehydrogenase family signature 153 172 IPR002347 -
Pvu1g2582 279 PRINTS Glucose/ribitol dehydrogenase family signature 174 191 IPR002347 -
Pvu1g2582 279 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 263 IPR036291 -
Pvu1g2582 279 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 8 277 - -
Pvu1g2582 279 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 179 - -
Pvu1g2582 279 Coils Coil 46 66 - -
Pvu1g2582 279 PANTHER BNAANNG04690D PROTEIN 8 277 - -
Pvu1g2582 279 CDD 17beta-HSD-like_SDR_c 10 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2582 Pvu-Chr1 50783692 50785852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2582 9 190 Acyl Lipid Metabolism Gene Families AT1G24360 33.511 7.29e-18 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2582 - - gmx:100789660 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2582 1 50783692 50785852 Pvu1g2582 1 50783692 50785852 ECH