Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2571 ATGTTGTGCGTCAACACCGCCTTCACTTCTTTCATACCCAGAAAACCAACTTGCGTTTTTTCCTCCAAATCAACCACCCCAATTTCCTGCACCCTTCAAGGAACCGTTGCTGAACCAAAATCTACAGCTGCTGCTGAACCGCTTTTGCTTAATGCAGTTCGTGGGGTAGAAGTTGAAAGACCACCGGTTTGGCTCATGAGGCAAGCAGGGAGGTACATGAAGAGTTACCAAACCATCTGTGAGAAATATCCTTCATTCCGTGAAAGATCTGAAAATGTGGATCTTGTGGTGGAAATTTCCCTGCAACCATGGCATGTTTTCAAGCCTGATGGAGTGATTTTATTCTCAGACATTCTTACTCCACTTTCTGGAATGAATATACCCTTTGATATTGTGAAGGGCAAGGGTCCTGTCATATTTGATCCTATTCACACAGATGCCCAGGTCAATCAAGTGAGAGAGTTTGTTCCTGAAGAATCAGTTCCATACGTTGGTGAAGCACTGACAATTTTGAGGAAAGAGGTGAATGATAAAGCTGCAGTTCTTGGTTTTGTTGGGGCACCGTTCACTCTGGCATCATATGTGGTTGAAGGTGGTTCATCTAAAAACTTCTCAAAAATAAAAAGATTGGCTTTCTCTGAATCCAAGATCCTGCACTCATTACTGCAAAAGTTTACAACGTCAATGGCAAGATACATTCAATACCAAGCTGATAATGGAGCTCAAGCTGTTCAGATATTTGATTCATGGGCAACAGAACTTAGTCCAGTGGATTTTGAAGAATTCAGTTTGCCTTACTTGAAGCAGATTATTGATACTGTGAAGAAAAGCCATCCAAATCTCCCTTTGATCCTATATGCTAGTGGATCTGGGGGCTTGCTTGAAAGACTAGCCTTGACAGGGGTGGATGTAGTTAGCTTGGATTGGACGGTTGATATGGCTGATGGTAGGAGGCGACTGGGACCAAATATAGCTGTCCAGGGAAATGTGGACCCTGGTGTTCTTTTTGGTTCCAAAGAGTTCATCACTGATCGGATAAATGATACTGTGAGAAAAGCAGGAAGAGGGAAACATATTTTGAATCTTGGTCATGGAATTAAAGTAGGTACGCCTGAGGAGAATGTTGCACATTTTTTTGAGGTTGCTAAATCAGTCAGATACTAA 1164 0.4235 MLCVNTAFTSFIPRKPTCVFSSKSTTPISCTLQGTVAEPKSTAAAEPLLLNAVRGVEVERPPVWLMRQAGRYMKSYQTICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPIHTDAQVNQVREFVPEESVPYVGEALTILRKEVNDKAAVLGFVGAPFTLASYVVEGGSSKNFSKIKRLAFSESKILHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIIDTVKKSHPNLPLILYASGSGGLLERLALTGVDVVSLDWTVDMADGRRRLGPNIAVQGNVDPGVLFGSKEFITDRINDTVRKAGRGKHILNLGHGIKVGTPEENVAHFFEVAKSVRY* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2571 387 Pfam Uroporphyrinogen decarboxylase (URO-D) 48 384 IPR000257 GO:0004853|GO:0006779
Pvu1g2571 387 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 182 198 IPR000257 GO:0004853|GO:0006779
Pvu1g2571 387 SUPERFAMILY UROD/MetE-like 48 386 IPR038071 -
Pvu1g2571 387 Hamap Uroporphyrinogen decarboxylase [hemE]. 46 386 IPR006361 GO:0004853|GO:0006779
Pvu1g2571 387 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC 18 387 - -
Pvu1g2571 387 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 18 387 - -
Pvu1g2571 387 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 62 71 IPR000257 GO:0004853|GO:0006779
Pvu1g2571 387 CDD URO-D 50 384 IPR006361 GO:0004853|GO:0006779
Pvu1g2571 387 Gene3D - 35 387 IPR038071 -
Pvu1g2571 387 TIGRFAM hemE: uroporphyrinogen decarboxylase 49 383 IPR006361 GO:0004853|GO:0006779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2571 Pvu-Chr1 50698637 50702165 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2571 K01599 - gmx:100817154 752.281