Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2481 ATGCCAAAAGGGATGGCTTCAGTCACCACATTTTCTCTAATGTTACACTTTCTGTTGTTAATATTATTTTCTTCCTTTCATCAAGTAAGCTTAGCTTTCACCTCGCAAGAGTACCATGAGGCTCTTGAGAAATCCATTCTCTTCTTTGAGGGACAACGGTCTGGAAAATTGCCTTCCAACCAGCGACTAACATGGAGGGGAAATTCTGGCTTGTCCGATGGCTCTTCTTATCATGTGGACCTAGTAGGTGGTTATTATGATGCTGGAGATAACGTTAAGTTTGGGTTGCCAATGGCCTTTACCACTACATTGTTAGCATGGAGTGTGATTGAATTTGGAAGCTCAATGATGGACCAGATTGAAAACGCTAGAGCTGCTATCCGCTGGAGCACCGATTACCTTCTTAAGGCTGCCACCACCACCCCTGACACATTATATGTCCAAGTAGGAGATCCGAACATGGATCACAAGTGTTGGGAAAGGCCAGAAGATATGGACACTCCACGCAATGTGTATAAGGTATCAGCTCAAAACCCAGGATCAGATGTAGCAGCAGAGACGGCAGCTGCACTGGCAGCTTCTTCAATAGTATTCAGAGATTCGGATCCAGCATATTCCTCCAAATTGCTTCAAGCAGCCATCAAAGTATTCAATTTTGCAGACCGTTACAGGGGCTCTTACAGTGATTCTCTTGGTTCTGTTGTCTGTCCATTCTACTGCTCTTACTCTGGATACCATGATGAACTTCTGTGGGGTGCATCATGGATTTATAAAGCCTCAGGAACTAGCTCATACATGGAATATATACGATCCAATGGCCACATTTTAGGTGCTGATGATGATGGTTTCTCCTTCAGCTGGGATGATAAGCGACCCGGAACCAAAATCCTCCTTTCCAAGGAATTCTTGGAGAAAAATTCAGAAGAGTTCCAATTATACAAGGCACATTCAGATAACTACATTTGTTCTCTAATGTCGGGAATACCTGGTTCTCAGGCTCAGTACACCCCAGGGGGGCTTCTGTACAAGGGGAGTGAAAGCAATTTGCAGTACGTGACATCGACAAGTTTCCTTCTCTTGGCATACGCTAAGTATCTTTCTGCAAACGAGGGCGTTGTCCGATGTGGGACTTCAACAGTCACGGGTGAAAAACTGGTAACACTAGCAAAAACACAAGTAGACTATATTTTGGGCAATAATCCAAGAAAGATGTCTTATATGGTGGGTTTTGGGGAGAGGTATCCAAAGCATATCCACCACAGAGGTTCCTCTCTACCTTCCATTGGTGCGAGGACTGAGCACATATCCTGCAACGAGGGGTTTCAGTATCTGCATGCAGGTTCTCCCAATCCAAATGAGCTTGTTGGAGGCATAGTAGGTGGTCCTGATAACAATGACAACTTCTCCGATGATCGAAATAACTATCAGCAGTCAGAGCCAGCAACTTACATCAATGCACCGTTTGTAGGTGCTGTTGCCTATTTCTCTGCTAAACCACCAACCTAA 1506 0.4456 MPKGMASVTTFSLMLHFLLLILFSSFHQVSLAFTSQEYHEALEKSILFFEGQRSGKLPSNQRLTWRGNSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLAWSVIEFGSSMMDQIENARAAIRWSTDYLLKAATTTPDTLYVQVGDPNMDHKCWERPEDMDTPRNVYKVSAQNPGSDVAAETAAALAASSIVFRDSDPAYSSKLLQAAIKVFNFADRYRGSYSDSLGSVVCPFYCSYSGYHDELLWGASWIYKASGTSSYMEYIRSNGHILGADDDGFSFSWDDKRPGTKILLSKEFLEKNSEEFQLYKAHSDNYICSLMSGIPGSQAQYTPGGLLYKGSESNLQYVTSTSFLLLAYAKYLSANEGVVRCGTSTVTGEKLVTLAKTQVDYILGNNPRKMSYMVGFGERYPKHIHHRGSSLPSIGARTEHISCNEGFQYLHAGSPNPNELVGGIVGGPDNNDNFSDDRNNYQQSEPATYINAPFVGAVAYFSAKPPT* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2481 501 SUPERFAMILY Six-hairpin glycosidases 36 497 IPR008928 GO:0005975
Pvu1g2481 501 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 395 421 IPR018221 -
Pvu1g2481 501 Pfam Glycosyl hydrolase family 9 38 491 IPR001701 GO:0004553|GO:0005975
Pvu1g2481 501 PANTHER ENDO-1,4-BETA-GLUCANASE 14 498 - -
Pvu1g2481 501 PANTHER ENDOGLUCANASE 4 14 498 - -
Pvu1g2481 501 Gene3D - 33 500 IPR012341 GO:0005975
Pvu1g2481 501 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 468 486 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2481 Pvu-Chr1 49999940 50002690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2481 35 496 Glycoside Hydrolase AT1G02800 64.935 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2481 - - var:108328044 934.095