Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2391 ATGGAAGAAAGCCCTCGAGCTCGAAGAAAGCGAAGGCACCCTTTTTCTTCTTCTCCCCCTTCTCCTCCACTTTCCAAGCGCCCCAATTTCCCTTCCTTCCAAGACATTCCCAACCTTCCTTCCAACGTCAAATCTCTCTGTCACCTCATCGCCACCACCTCCGCCGCTGCCATCGAGCACGCCCTCCAATGCGCCGATGCCGCCATTACCCCTCAAGACGTCGAGGAAGTCCTCAAACTCTCCTACGGCTTTCCAGGCCAGGCCGTCAAATTCTTCCGGTGGAGCGGCCGCCACCTCCGCGACAACCACACGCCCTATTCCTGGAACCTCGTGGTCGACATCTTGGGCAAGAATCGCTTCTTCGACGCGATGTGGGATGCTATTAAGTCAATGCAGAAAGAAGGGTTACTCTCACTGGCCACTTTCGCCTCTGTCTTCGGGAGCTATGTCATCGCCAACAGAACCCGGGAAGCGATTGTGGCGTTTGAGGTTATGGAGAATTACGGTTGTGTGAGGGACGTGATTGCTTTGAACTCATTGTTCAGTGCAATTTGTAGGGATGGTAGGACAGTTGATGCTTGTGATTACTTGCAGATTGCTAAGAAATTTGTCCGGCCGGATGCCGATTCTTACGCGATTTTGATGGAAGGATGGGAGGGAGAAGGAGACAAGGGTGTGGTTGGTGCGAAGGAGACTTTTGCTGAGATGGTGATTGAGATTGGATGGGATCCTGCCAATGTGCCTGCTTATGAATCATTCCTGTGTGCCCTTGTTAGAGGGCCTGATGGATTGCTTGAAGCTATTAAGTTTGTTGATTCCATGAGGGACAGGAGGTGTTACCCTGGTGTGAGGTTCTTGAAGGTTGCATTAGATGAGTGTATCAAGTATCATGATGTTAGGACTGCTCAGTTTTTCTGGGAGGTGTTGGTGGAGGTGGGGAGGGTGTTGCAGCCCTCCACGGAGATGTACAATTTGATGATTGCTTTGCTTTGTTATTGTGGTGATACTGATGCTGCGAGGAGGATGCTTGATGAGATGGTTTACCGAGGGGCATTTCCTGATGTGGTGACTTATAATTTGCTGTTCAAGTTCTTGATCAAGGGGAGGAAGTTGAGGGAGGCATCTGCAGTGTTTTCTGAGATGGTGAAGAACGAGTTTGTACCGGATCAGGATAACTGTGATGCGGCGGTTAAGGCTTATGTGGATGGTGGGGAGCCTCTTTTGGCGATGAAGGTTTGGAAGTGTTTGGTTGAGAATTATCAGAATGATTTGGAACGGACAGCGAATTTTCTGGTTGTGGGGCTTTGTGATTTGAATAGGGTTCCGGAGGCGGTTAAGTACGCTGAGGATATGATTGGAAGAGGAATCAGGTTGTCCTCTTCAGCCCTGTCAAAACTGAGACAAACCCTTGTCAAGGAAAGAAAGGAATTTGTGTATGAAGAACTTTTGAGAAAGTGCAAATCTCAATAA 1470 0.4912 MEESPRARRKRRHPFSSSPPSPPLSKRPNFPSFQDIPNLPSNVKSLCHLIATTSAAAIEHALQCADAAITPQDVEEVLKLSYGFPGQAVKFFRWSGRHLRDNHTPYSWNLVVDILGKNRFFDAMWDAIKSMQKEGLLSLATFASVFGSYVIANRTREAIVAFEVMENYGCVRDVIALNSLFSAICRDGRTVDACDYLQIAKKFVRPDADSYAILMEGWEGEGDKGVVGAKETFAEMVIEIGWDPANVPAYESFLCALVRGPDGLLEAIKFVDSMRDRRCYPGVRFLKVALDECIKYHDVRTAQFFWEVLVEVGRVLQPSTEMYNLMIALLCYCGDTDAARRMLDEMVYRGAFPDVVTYNLLFKFLIKGRKLREASAVFSEMVKNEFVPDQDNCDAAVKAYVDGGEPLLAMKVWKCLVENYQNDLERTANFLVVGLCDLNRVPEAVKYAEDMIGRGIRLSSSALSKLRQTLVKERKEFVYEELLRKCKSQ* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2391 489 Pfam PPR repeat family 318 365 IPR002885 -
Pvu1g2391 489 Gene3D Tetratricopeptide repeat domain 54 195 IPR011990 GO:0005515
Pvu1g2391 489 PANTHER OS02G0711100 PROTEIN 23 488 - -
Pvu1g2391 489 TIGRFAM PPR: pentatricopeptide repeat domain 322 354 IPR002885 -
Pvu1g2391 489 TIGRFAM PPR: pentatricopeptide repeat domain 106 136 IPR002885 -
Pvu1g2391 489 TIGRFAM PPR: pentatricopeptide repeat domain 356 389 IPR002885 -
Pvu1g2391 489 MobiDBLite consensus disorder prediction 1 31 - -
Pvu1g2391 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Pvu1g2391 489 Pfam PPR repeat 106 136 IPR002885 -
Pvu1g2391 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Pvu1g2391 489 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 23 488 - -
Pvu1g2391 489 Gene3D Tetratricopeptide repeat domain 196 429 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2391 Pvu-Chr1 49243870 49245549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2391 154 485 Glycosyltransferase AT1G05670 24.706 2.44e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2391 - - pvu:PHAVU_001G231300g 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2391 1 49243870 49245549 Pvu1g2391 1 49243870 49245549 ECH