Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2389 ATGGCTGATGATGATCCACAAGATGTAGCTGATAGGGAACGCATTTTCAAGCATTTTGATTCCAATGGTGATGGCCAAATCAGTTCACAAGAGCTTGGTGAAGCCCTTAAAGCACTTGGATCAGTGACCCCAGATGAAGTGCAACGGATGATGGATGAAATTGACACAGATGGTGATGGCTTCATTTCACATCAAGAGTTCACAGATTTTGCACGAGCCAACCGTGGTCTAGTGAGGGATGTAGCCAAGATTTTTTAA 258 0.438 MADDDPQDVADRERIFKHFDSNGDGQISSQELGEALKALGSVTPDEVQRMMDEIDTDGDGFISHQEFTDFARANRGLVRDVAKIF* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2389 85 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Pvu1g2389 85 PANTHER TROPONIN 4 85 - -
Pvu1g2389 85 CDD EFh 13 72 IPR002048 GO:0005509
Pvu1g2389 85 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Pvu1g2389 85 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Pvu1g2389 85 SUPERFAMILY EF-hand 10 71 IPR011992 -
Pvu1g2389 85 SMART efh_1 46 74 IPR002048 GO:0005509
Pvu1g2389 85 SMART efh_1 11 39 IPR002048 GO:0005509
Pvu1g2389 85 ProSiteProfiles EF-hand calcium-binding domain profile. 45 77 IPR002048 GO:0005509
Pvu1g2389 85 Gene3D - 2 85 - -
Pvu1g2389 85 Pfam EF-hand domain pair 14 71 IPR002048 GO:0005509
Pvu1g2389 85 PANTHER POLCALCIN NIC T 1 4 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2389 Pvu-Chr1 49225412 49226085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2389 5 85 EF-hand Containing Proteins AT5G17480 71.605 2.98e-37 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2389 K13448 - gmx:100776519 151.754
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2389 1 49225412 49226085 Pvu8g2428 8 54877892 54878465 PCT