Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2388 ATGGACGAAGAGGTGCGCAAGATCTTCAACAAGTTCGACAAGAACGGCGACGGGAAGATCTCGTGCTCGGAGCTGAGGGAGCTGATGGCGGCGCTGGGATCGAAAACTACCACGGAGGAGGTGCGGCGTATGATGGCGGAACTCGACCGGAATGGCGACGGCTACATTGATTTGAAGGAGTTCGGGGAGTTTCACTGCGGCGGAGGCGGCGGCGACGGGAAGGAGCTTCGGGAGGCGTTCGAGCTGTACGATCTGGACAAGAACGGGCTGATCTCGGCGAAGGAGCTGCACTCCGTGATGCGGAGGTTGGGGGAGAAGTGCTCCCTCAGTGACTGCCGGAGAATGATCGGAAACGTGGATGCCGACGGCGACGGCAACGTGAATTTCGAAGAGTTCAAGAAGATGATGACGCGCTCGTAG 420 0.5905 MDEEVRKIFNKFDKNGDGKISCSELRELMAALGSKTTTEEVRRMMAELDRNGDGYIDLKEFGEFHCGGGGGDGKELREAFELYDLDKNGLISAKELHSVMRRLGEKCSLSDCRRMIGNVDADGDGNVNFEEFKKMMTRS* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2388 139 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 139 - -
Pvu1g2388 139 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Pvu1g2388 139 CDD EFh 4 61 IPR002048 GO:0005509
Pvu1g2388 139 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 139 - -
Pvu1g2388 139 ProSitePatterns EF-hand calcium-binding domain. 84 96 IPR018247 -
Pvu1g2388 139 CDD EFh 75 137 IPR002048 GO:0005509
Pvu1g2388 139 ProSiteProfiles EF-hand calcium-binding domain profile. 36 70 IPR002048 GO:0005509
Pvu1g2388 139 ProSitePatterns EF-hand calcium-binding domain. 120 132 IPR018247 -
Pvu1g2388 139 ProSiteProfiles EF-hand calcium-binding domain profile. 107 139 IPR002048 GO:0005509
Pvu1g2388 139 SUPERFAMILY EF-hand 3 138 IPR011992 -
Pvu1g2388 139 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Pvu1g2388 139 Pfam EF-hand domain pair 3 62 IPR002048 GO:0005509
Pvu1g2388 139 Pfam EF-hand domain pair 75 137 IPR002048 GO:0005509
Pvu1g2388 139 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Pvu1g2388 139 SMART efh_1 111 139 IPR002048 GO:0005509
Pvu1g2388 139 SMART efh_1 4 32 IPR002048 GO:0005509
Pvu1g2388 139 SMART efh_1 75 103 IPR002048 GO:0005509
Pvu1g2388 139 SMART efh_1 40 68 IPR002048 GO:0005509
Pvu1g2388 139 Gene3D - 72 139 - -
Pvu1g2388 139 Gene3D - 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2388 Pvu-Chr1 49218669 49221075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2388 3 137 EF-hand Containing Proteins AT1G18210 57.778 4.64e-51 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2388 K13448 - gmx:100806813 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2388 1 49218669 49221075 Pvu8g2432 8 54898350 54899305 PCT