Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2371 ATGGAGTTTGGTTTAATGGCTTCGAAGGCCCTTAGACCCACCTCCAGGCTCCTCCGAACCATCGTCTCCAACCCTCAGCTTCGCAATCCCGAGGCCTCCGCGGCGCAGCCGGAGCGCCCGCCGCGGACTCCTGGAAACACCACAGATGTATTTTCCGTTAAACTCAAAGTTTGTCGTTGGTACCAAACTGGTGCACATGGTTGGAGGATAAATCTTTGGGATCCCTGTTTATGGATTGTTATATCTGGACATGTAGCAATGACTTTAGGAATTAGTGCCGGTGTCGCATATGCAGAAAATGTGAGAACTGAAGCATCTTCTAACAGTGACCCAGGAGAGGACTTAATTGGCTTGAGAAAGATTGAGGATGGTTCTGTCGTATCAAACTTACATACAGCAAAATGGAGAGTCTTTACTGATAAAGCTAGAGAATTTTTTCAACAGGGAAAACTAGACGAAGCTGAAAAACTCTTCCTTTCCGCCGTACAAGAAGCTAAAGAAGGTTTTGGCGAGCAAGATCCGCACGTTGCTTCTGCATGCAACAATCTGGCCGAATTCTACAGGGTTAAAAAGGCATTTGACAAAGCAGAACCATTGTATTTGGAAGCCATCAATATATTAGAGGAATCTTTTGGTCCTGATGATGTACGGGTTGGAGTTGCTGTTCACAACCTTGGGCAGTTCTACCTTGGACAACAGAAATTGGAAGAAGCCCGTGTTAACTATGAGCGCGCTTTGAAGATAAAAAGGCGCGTTCTGGGGTTTGGCCATTCAGAATGTTCAGATACAATGTATCATCTAGGAGTGGTGTTGTATCTTCAAGGAAAAGAAAGGGATGCTGAGGTCCTTATTAAGGACTCTATAAGAATGCTAGAGGAAGGTGGTGAAGGAGAGTCACATGTATGCATTAGAAGACTACGATACCTCTCACAGATATATATGAAGTCACATCAAGTTGCTGAAGCTGAAATGGTCCAGAGAAAGATCCTGCATGTTATGGAATTGTCAAAGGGATGGAATTCCTTGGCCACAGTTATTGCAGCTGAATCTCTGGCTTTGACCCTTCTAGCATCTGGCAATACAAAAGATTCGAAAGATCTTCTTGAAAGATGTCTTAATGTCCGGAAGGACTTGCTTCCCAGTGACCATATTCAGATTGGTGCAAACCTACTTCATCTAGCAAGAGTGGCATTGGTTGACTGCAGTCAACATAAAGAGTTGGATGTTTCTAGAGCTAAAGCTGAGCTTGACATTGCAAAGAATTATTTGCATAATTCCATAAGGATTGCACGTGAATGTTTAAAGAAGGTATCAAAACAAAAGGACAAGTTAAAGAAAAACAGTAAGCCTGGAGATTCTAGAAAGGAAGACCAAGCAGCATTGATCATATTGTTGCAATCACTCAATACATTGTCATCAATGGAGTTAGATAAGCAAGAAGTGCAAAAGATTCAGGAAGGGGATACTAACCTCGAGGCTCAGGAGGCACTTCTTCAATGCATTTCTGCTTACAAGGAGTTTGTATCTGAGAGGTCAATTGCTGATACCCCTGAAATAAAGAACGAGTACCTTTCATGTTTAAAGCGCGCTCAAAATTTGCTTGGACATAAACTTCATTAG 1620 0.4278 MEFGLMASKALRPTSRLLRTIVSNPQLRNPEASAAQPERPPRTPGNTTDVFSVKLKVCRWYQTGAHGWRINLWDPCLWIVISGHVAMTLGISAGVAYAENVRTEASSNSDPGEDLIGLRKIEDGSVVSNLHTAKWRVFTDKAREFFQQGKLDEAEKLFLSAVQEAKEGFGEQDPHVASACNNLAEFYRVKKAFDKAEPLYLEAINILEESFGPDDVRVGVAVHNLGQFYLGQQKLEEARVNYERALKIKRRVLGFGHSECSDTMYHLGVVLYLQGKERDAEVLIKDSIRMLEEGGEGESHVCIRRLRYLSQIYMKSHQVAEAEMVQRKILHVMELSKGWNSLATVIAAESLALTLLASGNTKDSKDLLERCLNVRKDLLPSDHIQIGANLLHLARVALVDCSQHKELDVSRAKAELDIAKNYLHNSIRIARECLKKVSKQKDKLKKNSKPGDSRKEDQAALIILLQSLNTLSSMELDKQEVQKIQEGDTNLEAQEALLQCISAYKEFVSERSIADTPEIKNEYLSCLKRAQNLLGHKLH* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2371 539 Coils Coil 427 447 - -
Pvu1g2371 539 Pfam Tetratricopeptide repeat 349 384 - -
Pvu1g2371 539 Gene3D Tetratricopeptide repeat domain 340 457 IPR011990 GO:0005515
Pvu1g2371 539 Gene3D Tetratricopeptide repeat domain 124 337 IPR011990 GO:0005515
Pvu1g2371 539 Pfam Tetratricopeptide repeat 178 250 - -
Pvu1g2371 539 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Pvu1g2371 539 SUPERFAMILY TPR-like 133 280 IPR011990 GO:0005515
Pvu1g2371 539 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 6 535 - -
Pvu1g2371 539 MobiDBLite consensus disorder prediction 28 47 - -
Pvu1g2371 539 SUPERFAMILY TPR-like 258 380 IPR011990 GO:0005515
Pvu1g2371 539 SMART tpr_5 261 294 IPR019734 GO:0005515
Pvu1g2371 539 SMART tpr_5 219 252 IPR019734 GO:0005515
Pvu1g2371 539 SMART tpr_5 135 168 IPR019734 GO:0005515
Pvu1g2371 539 SMART tpr_5 345 378 IPR019734 GO:0005515
Pvu1g2371 539 SMART tpr_5 177 210 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2371 Pvu-Chr1 49025079 49038536 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2371 - - gmx:100813040 832.402