Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2352 ATGAATGCTTTTATGTTTCAGCCCAATACGGCATGTTATGATCCACGTGTGGGTGTCCCACAAATCAGGACATGCAAAAGCATGCGAGAATTGAAGCAAGTGCATGCGTTTTTTGTCAAAACAGCACGAACCCATGACACCACAATAGCAACAGAGATTCTCAGTCTCAGTGCCACGTCTGATTTTCGTGATACTGGGTATGCCCTCTCGGTGTTCGACCAAATGCCTGACCGGAATTGCTTTGCTTGGAACACTGTGATAAGGGCACTTGCTGAAACCCAAGATAGGCTCTTGGATGCCCTGTTGGTTTTCTGTCAAATGATGACTGAGGCAACGGTAGAGCCTAACCGATTCACTTTCCCATCAGTGTTGAAGGCTTGCGCAGTCATGGCCAGGTTGGGAGAAGGGAAGCAGGTTCATGGGTTGGTTCTGAAGTTTGGATTGGGGGACGATGAGTTTGTTGTCACTAATTTGCTAAGGATGTATGTGATGTGTGCGAGTATGGAGGATGCTCATGTTTTGTTTTATAGGAATGTTAAGGGTGTTGATGATGTGAGGGGGTTGGTGAGAGAGGAGAAGAGGGGAGAGTTTAATGTGGTTCTATGCAATGTGATGGTTGATGGGTATGTAAGAGTTGGGAACCTTAAGGCTGCTAGGGAGTTGTTTGACAGGATGGCTCAAAGGAGTGTGGTTTCTTGGAATGTGATGATTTCTGGGTATGCTCAAAATGGGTTTTATAGAGAGGCCATAGAGGTGTTTAATAGGATGATGCAGAATGTAGATATGTTGCCGAACCGGGTCACTTTGGTCAGTGTGCTCCCTGCAATTTCGCGTCTTGGAGCGCTTGAGTTGGGGAAATGGGTGCATTTGTATGCAGAGAAGAATAAGATTCGGATTGATGATGTGCTTGGTTCGGCTTTGGTTGATATGTACGCCAAGTGTGGGAGCATTGAGAAGGCTATTCTGGTCTTTGAGAGGCTACCTCAAAACAATGTTATAACATGGAATGTTGTTATTAGTGGTCTTGCCATGCATGGTAAAGCCAATGATGTGTTTAATTATTTGTCGAAGATGGAAAAATGTGGAATATCCCCTAGTGATGTTACGTATATAGCCATCTTGAGCGCTTGTAGCCATGCAGGCTTAGTGGACAAGGGAAGATCATTTTTTAGTGACATGGTTAATAGGATTGGATTAGAGCCTAAAATTGAACACTATGGATGCATGGTTGATCTTCTGGGCCGTGCTGGTTATCTTGAAGAAGCAGAACAACTTATATTGAACATGCCAATGAAACCAGATGATGTCATATGGAAGGCTTTACTTGGTGCTTGTAAGATGCATAAAAATATCGAAATAGGTACGCGTGTTGCAGAGGTTTTAATGCAATTGGCCCCTCATGACAGTGGGGCATATGTGGCTCTCTCCAACATGTATGCCTCAACAGGGGATTGGGATGGAGTTGCAGAGGTGAGGTTAATGATGAAAGACATGGACATAAGAAAAGACCCTGGATGTAGCTGGATTGAAATTGACGGTGTTATTCATGAGTTCCTTGTTGAGGATGATTCCCATCCTAGAGCCAAAGACATACACTCAATGTTGAAGGAAATTTCAAACAAGTTGAGCTTGGAAGGTCATATGCCAGATACCACACAAGTGTTGCTCAAGATGGATGAGAAAAACAAAGAAACCGTACTGCACTACCATAGTGAGAAGATTGCTGTTGCTTTTGGCTTAATTAGTACACCCCCAAAGACACCACTTTGCATTGTGAAAAATTTGAGAATTTGTGAAGATTGTCATTCCTCGATGAAATTAATCGCGAAAATGTATGAGCGAAAGATAGTTATTCGAGATAGGAAGCGCTTTCACCATTTTGAACATGGTTCATGTTCTTGTATGGACTATTGGTAG 1917 0.4319 MNAFMFQPNTACYDPRVGVPQIRTCKSMRELKQVHAFFVKTARTHDTTIATEILSLSATSDFRDTGYALSVFDQMPDRNCFAWNTVIRALAETQDRLLDALLVFCQMMTEATVEPNRFTFPSVLKACAVMARLGEGKQVHGLVLKFGLGDDEFVVTNLLRMYVMCASMEDAHVLFYRNVKGVDDVRGLVREEKRGEFNVVLCNVMVDGYVRVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYREAIEVFNRMMQNVDMLPNRVTLVSVLPAISRLGALELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAILVFERLPQNNVITWNVVISGLAMHGKANDVFNYLSKMEKCGISPSDVTYIAILSACSHAGLVDKGRSFFSDMVNRIGLEPKIEHYGCMVDLLGRAGYLEEAEQLILNMPMKPDDVIWKALLGACKMHKNIEIGTRVAEVLMQLAPHDSGAYVALSNMYASTGDWDGVAEVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHPRAKDIHSMLKEISNKLSLEGHMPDTTQVLLKMDEKNKETVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLIAKMYERKIVIRDRKRFHHFEHGSCSCMDYW* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2352 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Pvu1g2352 638 Pfam DYW family of nucleic acid deaminases 546 638 IPR032867 GO:0008270
Pvu1g2352 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 401 IPR002885 -
Pvu1g2352 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 228 IPR002885 -
Pvu1g2352 638 PANTHER - 24 632 - -
Pvu1g2352 638 Pfam PPR repeat 405 430 IPR002885 -
Pvu1g2352 638 Pfam PPR repeat 200 228 IPR002885 -
Pvu1g2352 638 Pfam PPR repeat 231 258 IPR002885 -
Pvu1g2352 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 264 IPR002885 -
Pvu1g2352 638 Gene3D Tetratricopeptide repeat domain 181 284 IPR011990 GO:0005515
Pvu1g2352 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 115 IPR002885 -
Pvu1g2352 638 Pfam E motif 448 510 IPR046848 -
Pvu1g2352 638 Pfam PPR repeat family 331 378 IPR002885 -
Pvu1g2352 638 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 24 632 - -
Pvu1g2352 638 Gene3D Tetratricopeptide repeat domain 21 180 IPR011990 GO:0005515
Pvu1g2352 638 Gene3D Tetratricopeptide repeat domain 303 566 IPR011990 GO:0005515
Pvu1g2352 638 TIGRFAM PPR: pentatricopeptide repeat domain 200 230 IPR002885 -
Pvu1g2352 638 TIGRFAM PPR: pentatricopeptide repeat domain 333 366 IPR002885 -
Pvu1g2352 638 TIGRFAM PPR: pentatricopeptide repeat domain 231 265 IPR002885 -
Pvu1g2352 638 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2352 Pvu-Chr1 48880544 48882460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2352 32 638 Glycoside Hydrolase AT3G49170 34.697 3.77e-129 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2352 - - gmx:100812343 1174.84