Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2347 ATGACTTCTTTGAGCCGAGAATTAGTGTTCTTGATACTCCAATTTTTGGAGGAGGAGAAGTTCAAGGACTCCGTGCACAGGCTTGAGAAAGAATCTGGCTTTTTCTTCAATATGAAGTACTTTGAGGAAAAAGTACAGGCTGGTGAATGGGAAGAACTTGAGAAGTACTTAACAGGGTTTACTAAAGTTGACGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAAAAATATCTGGAAGCACTTGATAGGAAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAATTTTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACCCAGCTTTTAACTCTTAGTAATTTCAGGGAAAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAGGGATCATGTTGATAGAGCTAAAAAAGCTAATAGAAGCAAATCCTCTTTTCCGTGACAAACTTATCTTCCCTACCCTTAGGTCATCAAGATTGCGGACGTTGATCAATCAAAGTTTAAACTGGCAGCACCAGCTTTGCAAAAACCCTAGGCCAAACCCAGATATAAAGACTTTATTCATCGACCACACATGTACACCTCCTAATGGTCCTCTAGCACCTACACCTGTCAATCTTCCAATTGCTGCCGTTGCAAAGCCTGCAGTTTATAATTCAATTGGAGCTCATGGTCCCTTTCTCCCTGCCGCAGCAACTGCTAATGCTAGTGCTTTGGCTGGTTGGATGGTCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCAACCATGCCTGTCCTACAGAATCAAGTGTCTATCCTGAAGCATCCAAGAACACCTCCAATAACTTCTGGCATGGTTGATTATCAGAATGCTGATCATGAGCAGTTAATGAAAAGACTCCGGCCTGCTCCTTCTCCAGAGGAGGTTTCCTATCCTGCCACTCGACAAGCCTCTTGGTCACTGGATGATCTACCAAGAACAGTGGCAATGACATTGCAGCAAGGATCCTCTGTGACAAGCATGGACTTTCATCCTTCGAACCAAACCTTTCTTCTTGTTGGTTCTAGCAATGGTGAAATTACACTTTGGGAACTTGGGTTGCGAGATAGGTTGGTCACAAAGCCGTTCAAGATATGGGATAAATCAGTGTGCTCATTACCATTTCAGGCAGCTATGGTCAAAGATGCACCTATTTCTGTCAGTCGTGTTACATGGAGCCTGGATGGAAATTTTGTGGGTGTTGCATTTACTAGACATTTGATTCACTTGTATTCGTACATTGGATCAAATGAGCTGGCTCAGCGCATAGAGGTTGATGCCCATATTGGTGGTGTTAATGACTTGGCATTTGCACATCCAAATAAACAACTCTGTATTGTGACTTGTGGAGATGATAAGTTGGTAAAGGTGTGGGATTTGACTGGACGGAAACTATTTAACTTTGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCACAAGGACAACATTCAGTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTGTACGATAATATGGGCTCTAGGGTTGACTATGATGCCCCAGGCCATTGGTATACCACACTGCTCTATAGTGCTGATGGAAGTAGACTGTTTTCCTGTGGGACTAGTAAAGACGGAGAGTCCTTTCTTGTTGAATGGAATGAAACTGAAGGAGCTATTAAGAGAACATACAATGGGTTCAGAAAGAAATCTCCTGGTGTTGTGCAGTTTGACACAACCCAAAATCGCTTCTTGGCTGCTGGTGAAGATGGCCAAATCAAATTTTGGGAGATTGACAGCATTAATCTTCTAACAAGCACTGATGCAGAGGGTGGATTACAGGCCCTTCCACTCTTGAGATTCAACAAAGAAGGAAGTCTTCTTGCTGTCACTACTGCAGACAATGGATTCAAAATTCTTGCTAATGTCAGTGGTCTTAGATCCTTAAGAACAGTTGAAACTCCAGGATTTGAAACACTGAGGTCATCTATTGACTCTGCTGCAATCAAGAATAGAGGAGTTGATCCCACAGGTCGAAATGCAGAGAAACCTAGAACTGTGGAAGAGGGAATAGATAGAGGTAAACCATGGCAGCTGGCTGAAATTGTTGATCCTGTTCAATGTCAGTCAGTTACGATGCCGGACAGTACAGATTCTTCCAGCAAGGTTGTTCGACTTTTGTATACAAACTCTGGTGCTGGTCTATTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGTCTCGTAGTGAACAAAATCTCAATGGGAAGGCAACTGCCAGCGTTGTTCCACAGCATTGGCAACCCAGCAGTGGTCTTCTTATGACTAATGATGTCTCAGGTGTCAACCTTGATGAAGCTGTTCCTTGCATTGCACTCTCAAAGAATGACTCATATGTTTTGTCTGCCTGTGGTGGAAAGGTTTCGTTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCCCCTGCCTCTACCTTTCTGGCTTTCCACCCTCAAGATAATAACATCATAGCCATTGGGATGGAGGATTCAGCAATTTACATTTATAATGTTAGAGTGGATGAGGTGAAATCCAAATTGAAGGGTCACCAAAAGCGAATTACTGGTTTCGCCTTTTCAACCTTCCTTAACATCCTGGTTTCATCTGGTGGTGATGCTCAACTCTGTGTATGGAGCATTGATACATGGGAGAAAAGAAAATCAGTTCCTATACAACTGCCAGCAGGAAAGGCTCCTTTAGGTGATACTCGTGTGCAGTTCCATTCAGACCAAATCCGGCTACTGGTAGCCCATGAGACTCAGTTGGCAATATATGACGCCTCTAAAATGGATCGGATTCGGCAGTGGGTTCCTCAAGATGTTCTGGCTGCTCCCATATCATATGCAGCTTATTCCTGCAATAGTCAGTTAATATACGCTACATTTTGCGATGGAAACACTGGGGTTTTTGATGCCGACAGCTTGAGACTGAGATGTCGTATTGCACTATCCACGTACTTTTCACCTGCGACTTTAAGTGTGAACCAATCTGTGTATCCTGTTGTTGTTGCGGCTCATCCAGCAGAGCCCAATCAATTTGCCGTTGGATTGACAGATGGGTCCGTGAAAGTGATAGAGCCCTGTGAATCAGAAGGTAAATGGGGAACCAGTCCACCTATGGATAATGGAATGATGAACGGTAGGACAGCTTCATCATCTACAACAAACAACCACACACCCGATCAGGCACAAAGATAA 3309 0.4325 MTSLSRELVFLILQFLEEEKFKDSVHRLEKESGFFFNMKYFEEKVQAGEWEELEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRKDKAKAVEILVGDLKIFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHTCTPPNGPLAPTPVNLPIAAVAKPAVYNSIGAHGPFLPAAATANASALAGWMVNASASSSVQAAVVTASTMPVLQNQVSILKHPRTPPITSGMVDYQNADHEQLMKRLRPAPSPEEVSYPATRQASWSLDDLPRTVAMTLQQGSSVTSMDFHPSNQTFLLVGSSNGEITLWELGLRDRLVTKPFKIWDKSVCSLPFQAAMVKDAPISVSRVTWSLDGNFVGVAFTRHLIHLYSYIGSNELAQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLVKVWDLTGRKLFNFEGHEAPVYSICPHHKDNIQFVFSTAIDGKIKAWLYDNMGSRVDYDAPGHWYTTLLYSADGSRLFSCGTSKDGESFLVEWNETEGAIKRTYNGFRKKSPGVVQFDTTQNRFLAAGEDGQIKFWEIDSINLLTSTDAEGGLQALPLLRFNKEGSLLAVTTADNGFKILANVSGLRSLRTVETPGFETLRSSIDSAAIKNRGVDPTGRNAEKPRTVEEGIDRGKPWQLAEIVDPVQCQSVTMPDSTDSSSKVVRLLYTNSGAGLLALGSNGVQKLWKWSRSEQNLNGKATASVVPQHWQPSSGLLMTNDVSGVNLDEAVPCIALSKNDSYVLSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSAIYIYNVRVDEVKSKLKGHQKRITGFAFSTFLNILVSSGGDAQLCVWSIDTWEKRKSVPIQLPAGKAPLGDTRVQFHSDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIALSTYFSPATLSVNQSVYPVVVAAHPAEPNQFAVGLTDGSVKVIEPCESEGKWGTSPPMDNGMMNGRTASSSTTNNHTPDQAQR* 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2347 1102 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 483 IPR001680 GO:0005515
Pvu1g2347 1102 MobiDBLite consensus disorder prediction 1066 1102 - -
Pvu1g2347 1102 SUPERFAMILY WD40 repeat-like 336 527 IPR036322 GO:0005515
Pvu1g2347 1102 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 686 IPR027728 GO:0006355
Pvu1g2347 1102 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 690 1102 IPR027728 GO:0006355
Pvu1g2347 1102 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Pvu1g2347 1102 Gene3D - 319 563 IPR015943 GO:0005515
Pvu1g2347 1102 ProSiteProfiles Trp-Asp (WD) repeats profile. 884 925 IPR001680 GO:0005515
Pvu1g2347 1102 SMART ctlh 34 92 IPR006595 -
Pvu1g2347 1102 Gene3D - 564 673 IPR015943 GO:0005515
Pvu1g2347 1102 Gene3D - 735 1073 IPR015943 GO:0005515
Pvu1g2347 1102 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Pvu1g2347 1102 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Pvu1g2347 1102 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 466 921 IPR011047 -
Pvu1g2347 1102 SUPERFAMILY WD40 repeat-like 940 1064 IPR036322 GO:0005515
Pvu1g2347 1102 SMART WD40_4 484 525 IPR001680 GO:0005515
Pvu1g2347 1102 SMART WD40_4 574 614 IPR001680 GO:0005515
Pvu1g2347 1102 SMART WD40_4 335 374 IPR001680 GO:0005515
Pvu1g2347 1102 SMART WD40_4 877 916 IPR001680 GO:0005515
Pvu1g2347 1102 SMART WD40_4 1022 1063 IPR001680 GO:0005515
Pvu1g2347 1102 SMART WD40_4 795 831 IPR001680 GO:0005515
Pvu1g2347 1102 SMART WD40_4 972 1008 IPR001680 GO:0005515
Pvu1g2347 1102 SMART WD40_4 439 482 IPR001680 GO:0005515
Pvu1g2347 1102 SMART WD40_4 834 874 IPR001680 GO:0005515
Pvu1g2347 1102 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Pvu1g2347 1102 PANTHER PROTEIN, PUTATIVE-RELATED 1 686 - -
Pvu1g2347 1102 PANTHER PROTEIN, PUTATIVE-RELATED 690 1102 - -
Pvu1g2347 1102 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Pvu1g2347 1102 Pfam WD domain, G-beta repeat 883 916 IPR001680 GO:0005515
Pvu1g2347 1102 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Pvu1g2347 1102 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 884 919 - -
Pvu1g2347 1102 SMART Lish 4 36 IPR006594 GO:0005515
Pvu1g2347 1102 MobiDBLite consensus disorder prediction 1079 1102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2347 Pvu-Chr1 48841287 48850752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2347 335 524 Miscellaneous Gene Families AT5G08390 27.179 6.60e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2347 - - gmx:100808421 2000.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2347 1 48841287 48850752 Pvu1g2347 1 48841287 48850752 ECH
Pvu1g2347 1 48841287 48850752 Pvu7g2047 7 43884392 43892955 PCT