Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2329 ATGACATGTTTACTACGAAAATCTCTTAGGACTAAGGCCTTGTCCCCGTTTCTGCACAAACTCGTCGGAAACTCGTCCGAGTCTCATCACACTCTGGCCTCCACATGCTGGTTTTGGTGTCACCAATCGTCACATTCCCTTCCACAAAAAACCAATCCTTGCTTCTCTTCAAATTCGATCCCAAGTTCCCGCTTCTCTAACGCGCTTCTCCAAATTCGTTTTTGGGTCTCTGAGGCCGCCGCCACCGAGCCCTCAACCTCTGATGGGCTCACGGTCCAAAAAATTCTGGCCAATAATTGGAACATTCTGGACGAAAACGACGGCGATTGGAAGAGTCATGCCGCCGCTGTAGCTCAATCTATTAATTTGATCAAACGCCGCTTACAGTGGGAAAAATTGAAGGTGAGGTTGGATATGTTATCATTCCAGCTGGGTAAGGAAGACCTTTGGGATGATCCGGTGCGCGCAGGTAAAATAAGCCGAGAACATGGTTCGCTCCTGGGGAAAATGAAAGAAGTAAATGCATTGGAACAAGAGTTACTTGAGCATATTGACATGATAAAGCTTGCCCGCGAAGAGAATGATGCGGATTTGGAATCGGAATCATTGAAAGTTTTGCTTAACATGAGAAGAGATGCAAAAGAGAAAGAGCTAGAGGCGTTGCTTGCTGGGGAGCAAGATTCTTGTTCTTGCTACATTGAGGTTCAAGCTGGGGCTGGGGGTACGGAGAGCATGGACTGGGCATCAATGGTCATGCAGATGTATAAGTCATGGGCACAGCGGCGTGGATATAAAGTAACTTTAATGGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACCATTAAAGTAGATGGTGAGTTTGCATTTGGATATGTCAAAGCAGAAATAGGAGTGCACAGGCTGGTGCGCATATCACCTTTTGACAGCAATAAGCGACGACATACTTCATTTGCTGCTGTGGCAGTGATTCCAATCCTAGGTGATGGATCTACCCATGTACAGATTAATGAATCTGATCTTAGAATTGAACGATTTCGGGCTGGTGGTCCTGGTGGCCAGCATGCTAACACAACCGATAGTGCTGTAAGAATAGTTCATATTCCTACAGGAGTTACTGCAACTTGTCAGAACGAAAGATCGCAGCATCAGAATAAGGCTTCAGCTATGGCTGTGCTTCAGTCAAGGTTAGACCAACTGGAGATGGCACGCCAGGCTAAGTTCAATGCACAACATACAGAGTCTCTCACTGACATAACATGGGGCAGTCAGATTCGTAGTTATGTTCTCCATCCTTACCGTATGGTGAAAGATCTTAGAACAAACTATGAGGTTTCAGATCCTGACTCCGTCCTTGAGGGTGATCTAGACGGATTCATCTTGAGCTATCTATCAGCTTCTTTGGATAAAGAGGATGATGCTTAA 1431 0.4577 MTCLLRKSLRTKALSPFLHKLVGNSSESHHTLASTCWFWCHQSSHSLPQKTNPCFSSNSIPSSRFSNALLQIRFWVSEAAATEPSTSDGLTVQKILANNWNILDENDGDWKSHAAAVAQSINLIKRRLQWEKLKVRLDMLSFQLGKEDLWDDPVRAGKISREHGSLLGKMKEVNALEQELLEHIDMIKLAREENDADLESESLKVLLNMRRDAKEKELEALLAGEQDSCSCYIEVQAGAGGTESMDWASMVMQMYKSWAQRRGYKVTLMDEMPGEIAGIKRATIKVDGEFAFGYVKAEIGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSTHVQINESDLRIERFRAGGPGGQHANTTDSAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQAKFNAQHTESLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDKEDDA* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2329 476 Gene3D - 329 425 - -
Pvu1g2329 476 SMART PCRF_a_2 188 298 IPR005139 GO:0006415
Pvu1g2329 476 SUPERFAMILY Release factor 134 470 IPR045853 -
Pvu1g2329 476 Pfam PCRF domain 135 323 IPR005139 GO:0006415
Pvu1g2329 476 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 87 474 - -
Pvu1g2329 476 Hamap Peptide chain release factor 2 [prfB]. 106 470 IPR004374 GO:0005737|GO:0006415|GO:0016149
Pvu1g2329 476 Pfam RF-1 domain 335 442 IPR000352 GO:0003747|GO:0006415
Pvu1g2329 476 Gene3D - 233 462 - -
Pvu1g2329 476 Gene3D Release factor 109 219 - -
Pvu1g2329 476 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 87 474 - -
Pvu1g2329 476 TIGRFAM prfB: peptide chain release factor 2 111 468 IPR004374 GO:0005737|GO:0006415|GO:0016149
Pvu1g2329 476 Coils Coil 173 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2329 Pvu-Chr1 48701650 48706378 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2329 K02836 - gmx:100797427 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2329 1 48701650 48706378 Pvu1g2329 1 48701650 48706378 ECH