LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g2308	ATGTCAGTGTCTTTCTCGTCAACCTCGCTTCCGTTCTCCGAATCTTCATTCGCATTCCAAAGACCACCACATCTTTGCTCTAAAGTTGCATCAAATAACTTTCCCTCAGTAACCTGTGGTGGTCGTCTTGCACTGAATGTTGGAGGCACAAGCTTGTGTCGAAGGTTTCGTGGCTTCAAACTGTGGGTACTTGAGAGACTCAACTCTCAATTTCAGTCACCAAAGCAACCTAAGAATAGAATTCGCTTCGAAAATAATTTGGAAAATTCCGGTTCATCAAATGAAAAGGGACCACTTTCTGATTCATCCTCGATTCTCCGTGTTCCTGATGATAAGCTCACTTCCATGGAGTCTCCATCTTTGCTGCAGACAGGTTTGTCTGCTACTCCCATGGATGTTAGCAGAAAACCCTCACTTTGCATTTCTGTCATAGGAGCTACCGGTGAGCTGGCAAAGAGTAAGATTTTCCCTGCTTTATTTGCCCTCTACTACAGTGGCTTTCTTCCTGAGGATGTAGGCATTTTTGGGTATTCAAGGAAGGATATAACGGATGAAGACCTGCGATCTATTATAGCTTCAACATTAACATGCCGAGTTGATCATCAAGAGAATTGTGTGGACAAATTAGATGCTTTCCTTAGTAGAACATATCATATTAATGGAGGCTATGACAATAAATATGGGATGTCCATGCTCAATGCCCGAATGGAACAAATTGAGGGAGGATCCAAAACCAACAGGATATTCTACCTTTCTGTGCCACAAGAAGCAGTTTTAGATGTTACGGCTTGTCTTTCTAGCAGTGCTCAGACTCAAAAGGGATGGAATCGCATAATATTTGAGAAGCCATTTGGCTTTGATGCACTTTCTTCCTTTAGGATGACACAATATCTACTTTCAAACTTTGAGGAAAAGCAAATATATAGGATTGATCATCTTCTAGGAAGGAATCTCATTGAAAATCTCACAGTTTTAAGGTTTTCAAATCTAGTTTTTGAGCCACTTTGGAGTCGTACTTACATAGACAATGTACAGGTCATTTTATCAGAGGACCTGACCAAGCATCCAGGAAGATATTTCAGTGGCTATGGCATTATCCGTGATATTGTTCATAGTCACATTCTCCAAACAATTGCATTGCTTGCCATGGAACCACCAGTAAGCCTTGATGGAGAAGATATTCGAAATGAAAAGGTCAAGGTTTTGAGGTCAATTCGCAAATTGGAGCCTAAGGATGTCATTCTTGGGCAATATAAAGCAAGTGGTGGAGCCAAAGTTGATACATGCTTAAATGGTCTGACACCTACTTATTTTGCTGCTGCACTATACATTGACAATGCACGATGGGATGGTGTGCCGTTTTTTATTAAAACAGGCTTGGGACTCATCAAACACCAAATGGAGATACGGATTCAATTTCGAAATGTTCCGGGTAATGTGTACCGTGAGTGCATGGGGCATAACATGGACCGTGCTGTAAATGAGCTCATTCTCCGTGATGTTCCGGATGAGGCTATTCTGGTGAGAGTTAACAACAAGGTTCCAGGACTAGGCTTGCAACTGGACTCTTCAGAACTAAATTTGCTTTACAAGGACAAGTACAACATGGAGGTTCCAGATTCGTATGAGCAACTTCTTCTTGATGTCATTGATGGGGACAACCATTTGTTTATGAGAAGTGATGAACTTGAAGCTGCATGGAACATTCTAACTCCAATTCTGAATGAGATCGACAAAGACAATATATCAGTGGAGCTTTATGAGATGGGGGGTCGAGGTCCTGTGGGGGCATACTACCTTTGGGCAAAACATGGTGTCCGTTGGGTAGAGGATTAA	1836	0.4183	MSVSFSSTSLPFSESSFAFQRPPHLCSKVASNNFPSVTCGGRLALNVGGTSLCRRFRGFKLWVLERLNSQFQSPKQPKNRIRFENNLENSGSSNEKGPLSDSSSILRVPDDKLTSMESPSLLQTGLSATPMDVSRKPSLCISVIGATGELAKSKIFPALFALYYSGFLPEDVGIFGYSRKDITDEDLRSIIASTLTCRVDHQENCVDKLDAFLSRTYHINGGYDNKYGMSMLNARMEQIEGGSKTNRIFYLSVPQEAVLDVTACLSSSAQTQKGWNRIIFEKPFGFDALSSFRMTQYLLSNFEEKQIYRIDHLLGRNLIENLTVLRFSNLVFEPLWSRTYIDNVQVILSEDLTKHPGRYFSGYGIIRDIVHSHILQTIALLAMEPPVSLDGEDIRNEKVKVLRSIRKLEPKDVILGQYKASGGAKVDTCLNGLTPTYFAAALYIDNARWDGVPFFIKTGLGLIKHQMEIRIQFRNVPGNVYRECMGHNMDRAVNELILRDVPDEAILVRVNNKVPGLGLQLDSSELNLLYKDKYNMEVPDSYEQLLLDVIDGDNHLFMRSDELEAAWNILTPILNEIDKDNISVELYEMGGRGPVGAYYLWAKHGVRWVED*	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g2308	611	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	311	609	-	-
	Pvu1g2308	611	Pfam	Glucose-6-phosphate dehydrogenase, NAD binding domain	143	321	IPR022674	GO:0006006\|GO:0016614\|GO:0050661
	Pvu1g2308	611	Gene3D	Dihydrodipicolinate Reductase; domain 2	310	610	-	-
	Pvu1g2308	611	PANTHER	INACTIVE GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE 4, CHLOROPLASTIC	102	611	-	-
	Pvu1g2308	611	TIGRFAM	zwf: glucose-6-phosphate dehydrogenase	139	609	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu1g2308	611	Pfam	Glucose-6-phosphate dehydrogenase, C-terminal domain	324	608	IPR022675	GO:0004345\|GO:0006006\|GO:0050661
	Pvu1g2308	611	PRINTS	Glucose-6-phosphate dehydrogenase signature	277	290	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu1g2308	611	PRINTS	Glucose-6-phosphate dehydrogenase signature	301	329	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu1g2308	611	PRINTS	Glucose-6-phosphate dehydrogenase signature	352	369	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu1g2308	611	PRINTS	Glucose-6-phosphate dehydrogenase signature	370	386	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu1g2308	611	PRINTS	Glucose-6-phosphate dehydrogenase signature	448	474	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu1g2308	611	Hamap	Glucose-6-phosphate 1-dehydrogenase [zwf].	138	610	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Pvu1g2308	611	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	133	324	IPR036291	-
	Pvu1g2308	611	Gene3D	-	135	309	-	-
	Pvu1g2308	611	PANTHER	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD	102	611	IPR001282	GO:0006006\|GO:0016614\|GO:0050661

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g2308	Pvu-Chr1	48540011	48545496	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g2308	K00036		-	gmx:100796541	1077

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g2308	1	48540011	48545496	Pvu1g2308	1	48540011	48545496	ECH