Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2276 ATGGCTTCAATTCGGCTACCCCTAACAACATTCTTTTTAGTTCTCTCCGCTTCTTATCTCCAGATTGCCGGGGCGGAAGCTGAACCGTTGACCACTCTCCATCTTAAATCTCCAATTCTTCAGAAATCTATTGCTAAACAGATTAACGAAAATCCCGAGGCAGGATGGGAGGCTGCTTTAAATCCTCGTTTCTCCAATTATACAGTTGAACAATTTAAACGCCTTCTTGGAGTCAAACAGACGCCTAAAATCGAACTCAGGAGTACACCCGTTATTTCTCATCCAAAATCATTGAAATTGCCGGTGAATTTTGATGCAAGGAAAGCTTGGTCGCAGTGTAACACTATTGGAAGAATTCTAGATCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTAGAATCATTGTCAGATCGCTTTTGCATTCATTTTGATGTTTGTGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCAGCTTATCGGACTCCCAAGTGTGTTAAAAAATGTGTAGATGGGGGGAACCAGCTGTGGAAGAAGTCAAAGCACTTTAGTGTCAATGCCTACACGGTCAACTCTAATCCCCATGATATAATGGCAGAAGTGTACACAAATGGGCCAGTTGAGGTCGCATTTACTGTTTATGAGGATTTTGCTCATTACAAGTCAGGAGTTTACAAACACGTCACAGGTTATGCACTAGGCGGTCATGCAGTGAAGCTAATTGGGTGGGGAACAACTGATGATGGACAAGACTATTGGCTTCTCGCAAATCAGTGGAACAGAGAATGGGGAGATGATGGTTACTTCAAGATCCGAAGGGGGACAAACGAATGCGGGATTGAAGAGGAGGTAACTGCTGGTTTGCCTTCTACCAAAAACCTCGTAAGAGAGGTGACTGATATGGATGCTGACGCTGCTGTTTCATTCTGA 948 0.4378 MASIRLPLTTFFLVLSASYLQIAGAEAEPLTTLHLKSPILQKSIAKQINENPEAGWEAALNPRFSNYTVEQFKRLLGVKQTPKIELRSTPVISHPKSLKLPVNFDARKAWSQCNTIGRILDQGHCGSCWAFGAVESLSDRFCIHFDVCDPYFDQIGCSHPGCEPAYRTPKCVKKCVDGGNQLWKKSKHFSVNAYTVNSNPHDIMAEVYTNGPVEVAFTVYEDFAHYKSGVYKHVTGYALGGHAVKLIGWGTTDDGQDYWLLANQWNREWGDDGYFKIRRGTNECGIEEEVTAGLPSTKNLVREVTDMDADAAVSF* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2276 315 Gene3D Cysteine proteinases 32 145 - -
Pvu1g2276 315 SMART pept_c1 100 294 IPR000668 GO:0006508|GO:0008234
Pvu1g2276 315 CDD Peptidase_C1A_CathepsinB 101 293 - -
Pvu1g2276 315 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 16 146 - -
Pvu1g2276 315 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 148 301 - -
Pvu1g2276 315 SUPERFAMILY Cysteine proteinases 43 295 IPR038765 -
Pvu1g2276 315 Pfam Peptidase family C1 propeptide 40 82 IPR012599 GO:0004197|GO:0050790
Pvu1g2276 315 Pfam Papain family cysteine protease 100 293 IPR000668 GO:0006508|GO:0008234
Pvu1g2276 315 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 122 133 IPR000169 -
Pvu1g2276 315 PRINTS Papain cysteine protease (C1) family signature 122 137 IPR000668 GO:0006508|GO:0008234
Pvu1g2276 315 PRINTS Papain cysteine protease (C1) family signature 242 252 IPR000668 GO:0006508|GO:0008234
Pvu1g2276 315 PRINTS Papain cysteine protease (C1) family signature 258 264 IPR000668 GO:0006508|GO:0008234
Pvu1g2276 315 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 240 250 IPR025660 -
Pvu1g2276 315 Gene3D Cysteine proteinases 146 304 - -
Pvu1g2276 315 PANTHER CATHEPSIN B-LIKE PROTEASE 3 148 301 - -
Pvu1g2276 315 PANTHER CATHEPSIN B-LIKE PROTEASE 3 16 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2276 Pvu-Chr1 48264157 48272272 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2276 K01363 - gmx:100788988 581.637