Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2252 ATGATGTTGCGGGTGCAGAAATGTGTAGTATCCAATTGTCAAGTGTATTTTCTTAGAACAATAAAGCAACACGAATTCATTGTGAATAAAAGAAGAAATGCAGAAATGTTTCAATTGTTGTCGCGGACACCATGTTTCTGCGCACACAACATGTGTACGGTCACATCCGCAAAGCTGAATTACATGATCGACGCTCACATACAAGACAACAACATAAACCAGGCTCGTAAACTGTTTGACGATAATCCCTCATCCCGCAACCTTGTTTCCTGGAACATGATGATGACTGGGCACGTCAAACACTATCAAATTGAACATGCCCACAACCTGTTTGACCAAATGCCCCTTAAAGACACTGTTTCCTGGAATATCATGCTCTCTGGTTTTAGTAGAATCACGGACTCTGAGGGGTTGTACCGCCATTTCTTGCAAATGGGAAGATCTGGTGTTGCCCCGGATGACTATACCATCTCCACACTGCTCAGAACAGTTATAAGTACTAAGTTGGATGTTTTGGTTCCCCAGGTTCATGCTCTAGCGCTTCATTTGGCACTTAACTTGAGTGTGTTTGTTGGTTCTTCATTGATCAGAGCTTATGCGAATTTAAGAGAGGAAGAGGCTTTTAAGCGTGTGTTTGATGATATATTGGTGAAAGATGTCACATCTTGGAATGCTTTGGTTTCTGGTTATATGGAAGTGGGAAGAATGGATGATGCACAAACAAACTTTGATGCGATGCCCCAGAGGAACATAATTTCCTGGACTACTTTGGTGAATGGTTATATCAGAAACAAGAAGATAAACAAAGCAAGGTCTGTTTTTGACAAAATGAGTGAGAGGAATGTGGTGTCTTGGACGGTAATGATCAGTGGGTATGTGCAAAATAAGAGATTTATGGATGCATTGAAGCTTTTTCTTCTGATGTTTAAGTCAGGAACTCGTCCCAATCATTTCACGTTTTCAAGTGTGTTGGACGCATGTGCTGGTTGTTCCTCTCTTGTGGTGGGAATGCAGGTGCACCTGTGTGTTATCAAGTCTGGCATACCAGATGATGTCATCTCATTGACCTCGCTTGTGGATATGTATGCTAAATGTGGGGATACGGATGCAGCATTTCTTGTTTTCGAGTCCATTCTGAAAAAGAATTTGGTGTCATGGAATTCCATAATTGGCGGCTTTGCGAGGAACGGGCTTGGTAACCGAGCACTAAAGGAGTTTGATCGGATGAAAACAGTTGGTGTTAAACCAGATGAAGTTACTTTTGTAAATGTGTTGTCAGCGTGCGTGCATGCAGGTCTTGTTCAAGAAGGTGAAAAGCACTTCACTTCTATGCTGTCAAAGTATGGAATCCAAGCAGAGATGGAACACTTTACTTGCATGGTGGACCTCTACGGAAGAGCAGGGCAATTTGATGAAGCAGTAAAATTGATCGAGAATATGCCATTTGAGCCTGACGTGGTGTTGTGGGGTGCGCTGCTGGCAGCTTGTGGCATGCATTCAAATTTAGAACTCGGGGAGTATGCTGCAGAGAGGATCCGCAAACTGGAAAGCAACCATCCTGTTTCTTACTCAATACTTTCAAAGATCCAAGGTGAGAAAGGAATATGGAGCAGTGTTAATGAACTGAGGGACTTGATGAAAGTGAAACAAATCAGAAAGCAGAAGGCAATTAGTTGGGTTCTGTAA 1686 0.4253 MMLRVQKCVVSNCQVYFLRTIKQHEFIVNKRRNAEMFQLLSRTPCFCAHNMCTVTSAKLNYMIDAHIQDNNINQARKLFDDNPSSRNLVSWNMMMTGHVKHYQIEHAHNLFDQMPLKDTVSWNIMLSGFSRITDSEGLYRHFLQMGRSGVAPDDYTISTLLRTVISTKLDVLVPQVHALALHLALNLSVFVGSSLIRAYANLREEEAFKRVFDDILVKDVTSWNALVSGYMEVGRMDDAQTNFDAMPQRNIISWTTLVNGYIRNKKINKARSVFDKMSERNVVSWTVMISGYVQNKRFMDALKLFLLMFKSGTRPNHFTFSSVLDACAGCSSLVVGMQVHLCVIKSGIPDDVISLTSLVDMYAKCGDTDAAFLVFESILKKNLVSWNSIIGGFARNGLGNRALKEFDRMKTVGVKPDEVTFVNVLSACVHAGLVQEGEKHFTSMLSKYGIQAEMEHFTCMVDLYGRAGQFDEAVKLIENMPFEPDVVLWGALLAACGMHSNLELGEYAAERIRKLESNHPVSYSILSKIQGEKGIWSSVNELRDLMKVKQIRKQKAISWVL* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2252 561 Gene3D Tetratricopeptide repeat domain 444 516 IPR011990 GO:0005515
Pvu1g2252 561 Gene3D Tetratricopeptide repeat domain 332 443 IPR011990 GO:0005515
Pvu1g2252 561 Gene3D Tetratricopeptide repeat domain 174 246 IPR011990 GO:0005515
Pvu1g2252 561 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 50 559 - -
Pvu1g2252 561 Pfam PPR repeat family 280 328 IPR002885 -
Pvu1g2252 561 Pfam PPR repeat family 381 429 IPR002885 -
Pvu1g2252 561 Pfam PPR repeat family 117 163 IPR002885 -
Pvu1g2252 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Pvu1g2252 561 Gene3D Tetratricopeptide repeat domain 28 173 IPR011990 GO:0005515
Pvu1g2252 561 Gene3D Tetratricopeptide repeat domain 247 331 IPR011990 GO:0005515
Pvu1g2252 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Pvu1g2252 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Pvu1g2252 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 381 IPR002885 -
Pvu1g2252 561 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Pvu1g2252 561 Pfam PPR repeat 456 480 IPR002885 -
Pvu1g2252 561 Pfam PPR repeat 89 115 IPR002885 -
Pvu1g2252 561 Pfam PPR repeat 222 250 IPR002885 -
Pvu1g2252 561 TIGRFAM PPR: pentatricopeptide repeat domain 457 480 IPR002885 -
Pvu1g2252 561 TIGRFAM PPR: pentatricopeptide repeat domain 384 418 IPR002885 -
Pvu1g2252 561 TIGRFAM PPR: pentatricopeptide repeat domain 252 283 IPR002885 -
Pvu1g2252 561 TIGRFAM PPR: pentatricopeptide repeat domain 89 114 IPR002885 -
Pvu1g2252 561 TIGRFAM PPR: pentatricopeptide repeat domain 283 316 IPR002885 -
Pvu1g2252 561 Pfam E motif 499 560 IPR046848 -
Pvu1g2252 561 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 50 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2252 Pvu-Chr1 48051229 48053304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2252 307 561 Glycoside Hydrolase AT3G49170 25.758 3.92e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2252 - - pvu:PHAVU_001G217700g 1105.89