Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2239 ATGGATTCGGCGAACGGAGCAATGACGGTGAGAGACCAACGGTTAACGGAATGGCGCATGCACCGTGGTCCCTACCTCGGAGACATTTCAGCTCTGTGTTTTCTCCACCTTCCAAATCTCTCTCTTCCTTTGCTGCTCGCAGGTTTGGGTTCTGAAATTGCGGTCTATGATTTGGAAATGAGTAAGAGAATTAGGTCCTTCTCCGTATTTGAAGGAGTTCGCGTCCACGGAATCGCTTCTAGTTTTCCTCGCGGGACAATGGTTGCTGTATTTGGGGAAACGAGAGTGAAGCTGTTTAGCTTCGAATTTGATGGCGTTTCGGGGAGCGCTGAGCTGACGCTAGTTCATTTGTTGCCGAAGTTTGGTCACTGGGTTTTGGATGTTTGCTTCCTCGAGGGAAGCTTACCTCATTTCAATTTGGAGGATCGTTTTCTTGCTGTAGGATGTAGTGATAATTCAGTTCGTGTTTGGGATATTTCTAACTCCGTTGCGGTTCTTAAGGTTCAATCTCCAGTACGGTGCCTTTTGTACTCAATGCGATTATGGGGTCACAATCTTGAAGTTCTCCGAATAGCTTCTGGTACAATATTTAACGAGATTATTGTTTGGAAAGTGACCCGTCAACAAAATAAATCTTCAAGTCATCAAGAAAATCATGATCACGAGAGCATATCATCTTCTGTTTGCTGCCAACTAAAGGATAAATTGTTTGAGGCTACTCATGTATGTAAACTTATTGGACATGAAGGTTCAATCTTCCGAATAGCATGGTCGTCTTGTGGATCTAAATTGGTATCTGTTTCTGATGACCGGAGTGCACGTGTCTGGGCTGTTTCTATTGAAAGGGAACATACATTCTGCCAGGATTCCATTGCCCTTGTCTTATTTGGACATAATGCTCGGGTTTGGGACTGCGCTATTTCTGATAATTTTATTGTCACTGTTAGTGAGGATTGTACATGTCGAATTTGGGGAGTGGACGGTAAACAACTGCATGTCATTAAGGAGCACATTGGAAGAGGTATATGGAGATGTTTGTATGACCCAAATTCATCACTGCTTATAACTGCTGGGTTTGACTCTGCTATTAAAGTACATCAACCTCATACATCTCTGCCCATGGGCTTGGAAGCAGTACAAGGATCCCCTAGTAGAACAGAGTTGTTTTCGATTTGCATCCCTAATGTGTCAGAGCATATTGGATTTATAGACAGCAAGAGTGAATATGTTCGATGTTTGCGCTTTTCCTGTCAGGATTCTCTTTATGTTGCTACCAATCATGGTTATCTCTACCATGCTAAATTATGCGATACTGGAGGTGCTCAGTGGAATCAACTTGTCCAGGTCAGCAATGGGGCACCAATTATCTGTATGGATTTATTGTCCAAGGACTCTGTTGAACATGACTGTGGTGCTGATGATTGGATTGCTATTGGAGATGGTAAAGGAAATATGACAATTATTGAAGTTGCCAAGGATGATTGCACTCCTACAGTGAGATTGTGCTTTACTTGGCCAGCTGAAATGGAGAGACAGCTCCTGGGTACTTATTGGTGCAAATCTCTGGGATGTAGGTATGTTTTCACAGCTGATCCTAGAGGAACATTGAAACTCTGGAGATTGCCTGATCCTTCACAATCTGATCTTCAGAGCTCCATGAGGAGTAACAATTTATCACATATAGCAGAGTTCGTATCAAATTATGGAATGCGGATAATGTGTTTGGATGCATGCATGGAGGAAGAGGTCCTAGCATGTGGAGATGTACGGGGTAATATGGTTCTGTTCCCTTTTCTAAAGAATCTGGTCCTGAGCATATCTGATGCAGAAGAAAGGAAGATAGCTCCAGTAAATAATTTCAAAGGAGTTCATGGGATTTCAAGTGTCTCCAGTGTTTCTGTGACTAAGCTTGGTTATAATCAGATAGAGATACGCTCAACTGGAGCAGATGGTTGTATATGCTATCTGGAATATGATAAAGAAATGCATAATTTGCAATTTACGGGAATGAAACAAGTTAAAGAATTGTCTTTGATTGAGTATGTTTCTGTGGATAACAAGTCCGGTGATAGATTGTCAAGCAGCTATGCAGCTGGTTTTGCATCGGTGGATTTCATAGTATGGAACTTAGTGAATGAGAATAAGGTGGTGAACATTCCATGCGGTGGATGGCGACGTCCTCATTCCTATTATCTAGGTGATTTACCAGAGATGAAGAACTGTTTTGCCTTTGTCAAGGACGAATTGATACATATACATAGACACTGGATTCATAATAAAGATGGGAAGGTATACCCTCAAAATTTGCACATGCAGTTCCATGGTAGAGAGATACATTCCTTGTGCTTTATCTCTGATGATGTGCTTATTGGAGATAATTTCAAGTGCACCTTATTTTCTAAATCAAGTTGGATTGTAACTGGATGTGAGGATGGAACTGTGAGGTTGACTTGGTACTCTCCAGGCACTGAAAACTGGTCCATGTCAAAACTGCTTGGAGAACATGTTGGAGGATCAGCGGTGAGATCAATTTGTTGTGTGTCGAAAGTACACACAATCTCATCAGATATGGGTGATGCAGCTGATGAGAGGATTGAACTGAATGCTGCTGTTCAGAACAAAGATAATCCAACATTACTTATATCTGTGGGTGCAAAGCGTGTCTTAACTTCTTGGATATTAAAAAATAGGAGGCTGGACTTAGAAAATGACTTCCTAATCAATCATCAATACAAATCAGAAGGAGTTGATGACTGTTTTTTGTCAAGTTTGTCCTCATCAATGACGTTCCAGTGGCTTTCCACTGATATGCCAGCCAAACATTCAATTACACATAATACTTCCAAAATTAATTTGGAGAAGAGAGTTGGTGTTGCTGAAAATGTTTCTCATACAAATAATGATGCTGGGATGATTTCTGAGAGTGGAATGGCAAATTTGATCAAAGATAAACATGAAGATGACTGGAGATATCTTGCAGTCACGGCTTTTCTTGTTAGATATTCTGGTTCCAGGATAACTTTCTGTTTTGTTGTCATTGCATGTTCAGATGCTACACTTATGCTACGGGCTTTAATTTTACCCTTTCGCTTGTGGTTTGATGTCGCTGTACTGGTTCCTTCTCTGGCACCAGTTTTGTCATTGCAGCATATCATATTTCCCGTGTGTAGGCCTTGTAAAGAAAACATCCAAGCTGGAAATGTTTATATTGTGATTAGTGGGTCTACTGATGGCAGTGTTGCTTTTTGGGACCTAACTGACAGTGTCGAAGCTTTTATGCGGCGGGTTTCAGTTTGTAATGTTGAAATGCTTTTTGATTGTCAAAAACGACCACGCACAGGGAGAGGAAGTCAGGGTGGTAGACAGTGGAGATCCCTAAGCAGAGACTTGTCAAAGAAAAAACAAGACAGCAGTCTGGTCACTTTGAAAGCCAAAGAGAAGACCCCTTACGTGCCAAGTGATTCTGAAGACAGCAAGATGGATTGTTCTCAATCCTCACATATGGCTTCCCCGGAGTTAGAAAGCAAGACTGATGATTCCTCGATGGAAATATGTGAAATACAGCCTCTATGCCTTTTGCGAAAGATTCACCAATCTGGTGTCAACTGTCTCCATGTTTCAGAGATAAAGAGTGGGCAAAATACTGACAGTTGTCAAATGTACAGCATAGTTAGTGGGGGTGATGATCAAGCACTTAATCATCTAGTGGTTGAATTATCACCTAAATCTATAAATTTGAATCATGGGATTTTGAGCCCAGAGATCACTCGTATTGTCTCTGTGTCTGAATATGGAAAGGACTTCAATTTTCAAAATCCGAGCAAGAAATTTAAGATTAGATTCTTAAATAACGAAAAACTACCCTCTGCCCACAGCTCTTCTGTCAAAGGTGTCTGGACAGACGGATCTTGGGTGTTTTCCACTGGACTTGATCAACGGGTCAGATGCTGGCATCTTCAGCAGACCAAACTCATAGAACATTCATATCTAATAGTTAGTGTTCCGGAGCCAGAAGCGTTATCTGCTAGGGCCTGTGGCAGGAACCAATATCAAATTGCTGTTGCTGGAAGAGGGATGCAAATAATTGATTTTTCTGAATCTTGA 4104 0.4137 MDSANGAMTVRDQRLTEWRMHRGPYLGDISALCFLHLPNLSLPLLLAGLGSEIAVYDLEMSKRIRSFSVFEGVRVHGIASSFPRGTMVAVFGETRVKLFSFEFDGVSGSAELTLVHLLPKFGHWVLDVCFLEGSLPHFNLEDRFLAVGCSDNSVRVWDISNSVAVLKVQSPVRCLLYSMRLWGHNLEVLRIASGTIFNEIIVWKVTRQQNKSSSHQENHDHESISSSVCCQLKDKLFEATHVCKLIGHEGSIFRIAWSSCGSKLVSVSDDRSARVWAVSIEREHTFCQDSIALVLFGHNARVWDCAISDNFIVTVSEDCTCRIWGVDGKQLHVIKEHIGRGIWRCLYDPNSSLLITAGFDSAIKVHQPHTSLPMGLEAVQGSPSRTELFSICIPNVSEHIGFIDSKSEYVRCLRFSCQDSLYVATNHGYLYHAKLCDTGGAQWNQLVQVSNGAPIICMDLLSKDSVEHDCGADDWIAIGDGKGNMTIIEVAKDDCTPTVRLCFTWPAEMERQLLGTYWCKSLGCRYVFTADPRGTLKLWRLPDPSQSDLQSSMRSNNLSHIAEFVSNYGMRIMCLDACMEEEVLACGDVRGNMVLFPFLKNLVLSISDAEERKIAPVNNFKGVHGISSVSSVSVTKLGYNQIEIRSTGADGCICYLEYDKEMHNLQFTGMKQVKELSLIEYVSVDNKSGDRLSSSYAAGFASVDFIVWNLVNENKVVNIPCGGWRRPHSYYLGDLPEMKNCFAFVKDELIHIHRHWIHNKDGKVYPQNLHMQFHGREIHSLCFISDDVLIGDNFKCTLFSKSSWIVTGCEDGTVRLTWYSPGTENWSMSKLLGEHVGGSAVRSICCVSKVHTISSDMGDAADERIELNAAVQNKDNPTLLISVGAKRVLTSWILKNRRLDLENDFLINHQYKSEGVDDCFLSSLSSSMTFQWLSTDMPAKHSITHNTSKINLEKRVGVAENVSHTNNDAGMISESGMANLIKDKHEDDWRYLAVTAFLVRYSGSRITFCFVVIACSDATLMLRALILPFRLWFDVAVLVPSLAPVLSLQHIIFPVCRPCKENIQAGNVYIVISGSTDGSVAFWDLTDSVEAFMRRVSVCNVEMLFDCQKRPRTGRGSQGGRQWRSLSRDLSKKKQDSSLVTLKAKEKTPYVPSDSEDSKMDCSQSSHMASPELESKTDDSSMEICEIQPLCLLRKIHQSGVNCLHVSEIKSGQNTDSCQMYSIVSGGDDQALNHLVVELSPKSINLNHGILSPEITRIVSVSEYGKDFNFQNPSKKFKIRFLNNEKLPSAHSSSVKGVWTDGSWVFSTGLDQRVRCWHLQQTKLIEHSYLIVSVPEPEALSARACGRNQYQIAVAGRGMQIIDFSES* 1368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2239 1367 ProSiteProfiles Trp-Asp (WD) repeats profile. 1071 1093 IPR001680 GO:0005515
Pvu1g2239 1367 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 276 IPR001680 GO:0005515
Pvu1g2239 1367 SUPERFAMILY WD40 repeat-like 27 213 IPR036322 GO:0005515
Pvu1g2239 1367 SUPERFAMILY WD40 repeat-like 138 541 IPR036322 GO:0005515
Pvu1g2239 1367 PANTHER WD REPEAT PROTEIN 20 1365 - -
Pvu1g2239 1367 Gene3D - 1059 1334 IPR015943 GO:0005515
Pvu1g2239 1367 Gene3D - 3 236 IPR015943 GO:0005515
Pvu1g2239 1367 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 167 IPR001680 GO:0005515
Pvu1g2239 1367 SUPERFAMILY WD40 repeat-like 472 1323 IPR036322 GO:0005515
Pvu1g2239 1367 MobiDBLite consensus disorder prediction 1126 1141 - -
Pvu1g2239 1367 Pfam WD domain, G-beta repeat 242 276 IPR001680 GO:0005515
Pvu1g2239 1367 Pfam WD domain, G-beta repeat 122 158 IPR001680 GO:0005515
Pvu1g2239 1367 MobiDBLite consensus disorder prediction 1111 1178 - -
Pvu1g2239 1367 Gene3D - 439 900 IPR015943 GO:0005515
Pvu1g2239 1367 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 276 - -
Pvu1g2239 1367 SMART WD40_4 238 277 IPR001680 GO:0005515
Pvu1g2239 1367 SMART WD40_4 327 367 IPR001680 GO:0005515
Pvu1g2239 1367 SMART WD40_4 1275 1318 IPR001680 GO:0005515
Pvu1g2239 1367 SMART WD40_4 765 818 IPR001680 GO:0005515
Pvu1g2239 1367 SMART WD40_4 111 158 IPR001680 GO:0005515
Pvu1g2239 1367 SMART WD40_4 288 325 IPR001680 GO:0005515
Pvu1g2239 1367 SMART WD40_4 498 540 IPR001680 GO:0005515
Pvu1g2239 1367 MobiDBLite consensus disorder prediction 1157 1171 - -
Pvu1g2239 1367 Gene3D - 237 438 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2239 K24737 - gmx:100780968 2318.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2239 1 47967864 47979963 Pvu1g2239 1 47967864 47979963 ECH