Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2228 ATGGGGCTCTCATTCACCAAGCTTTTCAGTCGGTTGTTTGCGAAGAAGGAGATGCGTATACTTATGGTCGGTCTCGACGCCGCCGGTAAGACCACCATTCTCTACAAACTCAAGCTCGGAGAGATCGTCACCACCATTCCCACCATTGGGTTTAATGTGGAAACTGTGGAATATAAGAACATCAGCTTCACTGTCTGGGATGTTGGTGGCCAGGACAAGATCCGTCCTCTGTGGAGACATTACTTCCAAAATACCCAAGGTCTTATATTTGTGGTTGATAGCAATGACCGAGATCGTGTTGTGGAAGCGAGAGACGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGAGATGCTGTGCTTCTTGTTTTTGCAAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCCGAAATAACTGATAAACTTGGTCTTCATTCTCTCCGTCAGCGTCACTGGTATATCCAGAGCACATGTGCCACATCTGGTGAAGGACTTTACGAAGGACTTGACTGGCTCTCAAACAACATTGCCAACAAGGCATAG 546 0.4652 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2228 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 179 IPR027417 -
Pvu1g2228 181 PANTHER ADP-RIBOSYLATION FACTOR A1F 1 181 - -
Pvu1g2228 181 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Pvu1g2228 181 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Pvu1g2228 181 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Pvu1g2228 181 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Pvu1g2228 181 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Pvu1g2228 181 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Pvu1g2228 181 Gene3D - 4 181 IPR027417 -
Pvu1g2228 181 SMART arf_sub_2 1 181 - -
Pvu1g2228 181 TIGRFAM small_GTP: small GTP-binding protein domain 16 157 IPR005225 GO:0005525
Pvu1g2228 181 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Pvu1g2228 181 SMART rab_sub_5 18 180 - -
Pvu1g2228 181 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 181 IPR024156 GO:0005525
Pvu1g2228 181 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2228 Pvu-Chr1 47880349 47882559 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2228 K07937 - oeu:111409993 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2228 1 47880349 47882559 Pvu1g2228 1 47880349 47882559 ECH
Pvu1g2228 1 47880349 47882559 Pvu7g2095 7 44269055 44272273 ECH
Pvu1g2228 1 47880349 47882559 Pvu7g2177 7 45031087 45034916 PCT