LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g2199	ATGGGTCCTTCTCGTCGCAACAGCAATGGTCGATCACCGCTCGTCAATCAACAGCGCCAAATCACTTCGTTCTTCACCAAATCCCCTTCCCCCTCTCCCACCGTCGCTAAAAGCAACCAAGAGTCAAACCCTAACCACGCTTCAGATACTAACCCTAACCCTAGTTCCACGACTCTCACTCCCTCACCTCTCAATCCCAAGTCGAACAAATCACTTCTTGTAATCGGCTCTTCCATTTCTCCACCCTCCGCTTCGTCTTCTCTCTACGGAAAAGAAGTAGTTGGCCAAAGGATCAAGGTTTATTGGCCTTTAGACAAAGCCTGGTACGAAGGTTCCATCATATCCTTCGATAAAAACACCTCCAAGCACGTGGTTCGTTACTTCGATGACGAAGAAGAAGAATCGCTCAACCTTTCCGAGGAGAAGATCGAGTGGCTCCAGGAGTCCTCTACGAAGAAACTTAAACGCCTGCGTCGCGGATTCCCCGACATTAGGAAGATGGAGATTGACGAGGAAGAATTAAAAGAAGAAAGTAACAAAGGAGAAGAAGAAAAAGAACATGATAATGTTAACGATGATGATGACGATGATGATTCCAATGACGAGGATTGGGGGAAGAATGCTGCATCATTGGAGGAGGCTGGGGATGGGGAAGAAGATACGGATTTAGAGGATGAAGAGGACGTAGCGGAGAGTGCTAAAGGAAAAAAGACGGAGGCTAAAAAGCGGAAACTAAGTGCAACAGAGAAACTAAAGCCTGAGAAAAAGAGCAAGAGTGGAGTGGAAGTTTGTAAAGGGAGTTTCAAGCTCTCAGTATTGGAGCCTGCTACTAATTTGGAGATTAAAAAGACATCTAGTAGCGCTGACAATGTTTCATTTACCGAGACCTCTGAAAGATTTGCATGTCGTGAATCTCAGAAACTGCGCTTCCTGAAAGTAGATCGCAGGGATGCCAAGCGAAGAAGACCAGGGGATGAAAATTATGATTCAAGAACTCTCTACTTGCCTCCCGATTTCTTAAGGAATTTGTCGGAGGGTCAGAAACAATGGTGGGAGTTCAAGTCAAAGCATATGGACAAAGTGTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGAGTTAAAGAGCTTGACTTGCAGTATATGAAGGGAGACCAACCTCATTGTGGGTTTCCAGAGAAGAACTTCTCAATGAACGTGGAGAAACTTGCTAGGAAGGGTTACCGAGTTCTTGTTGTGGAGCAGACTGAAACACCTGAACAGCTGGAGATTCGTCGTAAGGAGAAGGGCTCTAAAGATAAGGTTGTAAGGCGTGAGATATGTGCAGTGGTAACAAAAGGTACATTGACGGATGGGGAGTTGCTGTCAGCAAACCCTGAAGCAGCATATTTAATGGCCCTGGCTGAGCATAATGAAAATCTTCCAAATGAAATTTCAGAGCATACCTATGGTGTTTGTATAGTTGATATTGCCACAAGTAGAGTCATTCTTGGACAGTTTAAGGATGATTTGGATTGCAGTGCCTTGTGCTCTATCTTATCTGAGATCAGGCCTGTTGAAATTGTGAAACCTGCCAAACTACTTAGTGCTGAAACGGAGAGAGCTCTGCTGAAGCATACCAGAAACCCTTTAGTGAATGAATTAGTTCCAGGTGTGGAATTCTGGGATGCTGGCAAAACTGTGGATCAATTGAAGCAAATTTATGGGAACACTAATGATGCTAGTGTTGAAGATAATGGGTTAAACTGCCTGCCAGATGTTTTACAGGAGCTGGTGAAATCAGGTGACAACAGTAGAAGTGCACTTTCAGCACTAGGTGGTGCTCTCTATTATCTGAAACAGGCCTTTCTAGATGAGAGATTGCTTAGATTTGCACAGTTTGAGTTACTTCCCTGTTCTGGTTTTGGTGATCTTGCTTCCAAACACTACATGGTTCTTGATGTGGCTGCCTTGGAGAATCTTGAGATTTTTGAGAATAGCAGGAATGGAGATTCTTCTGGCACGCTCTATGCCCAACTAAACCAATGTGTCACTTCATTTGGAAAGAGATTGCTAAAGACATGGCTTGCAAGACCGTTATGTCATGTGGAGTCCATTAAGGAACGCCAGGAAGCTGTTGCAGGTTTGAAGGGAGTTAATCTGCCATCTGCACTAGAATTTCGGAAAGCATTATCCAAGCTACCTGACATGGAGCGATTGCTTGCACGTATATTTTGCTCTAGTGAAGCTAGTGGAAGGAATGCTAATAAAGTTATTCTGTATGAGGATGCAGCTAAGAAGCAACTACAAGAGTTCATTGCAGCACTGCGTGGCTGTGAACAGATGTTACAAGCATGCTCTTCGCTTGGTGATATTTTGAATCATGTCCAATCTAGACAACTTCATCATCTGTTAACACCAGGTAAAGGTCTTCCTGATGTTTGTATGGAACTTAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATGGCTCTGGGCGTATAATACCTCATGAAGGAGTTGACACAGAGTATGCCTCAGCCTGTAAGGCAGTTAAAGATATTGAGTCCAGTTTATTGAAGCATCTCAAGGAGCAAAGGGAACTACTTGGAGACACATCAATTGCTTATGTCAGTGTTGGAAAGGATGTGTACCTATTGGAAGTGCCAGAAAATTTGTCTAGGAATATTCCTCGGGATTATGAATTGCGTTCATCCAGAAAAGGCTTCTTTAGGTACTGGACTCCAGATATTAAAATTTATTTAAAAGAACTCTCCCAAGCTGAATTGGAAAGGGAGTCCTTGTTGAAAAATACATTGCAAAGATTGATTGGGCGCTTTTGTGAAAACCACACCAAGTGGAAGCAGTTGGTCTCTGCAACTGCAGAACTGGATCTGTTGATCAGTTTAGCAATAGCTGGTGACTACTATGAAGGACCAACATGCAGACCAACTTTCGTTGGTACATTATGTACTAAAGAAGCTCCTTACCTCCATGCTAAAAGTTTGGGACACCCTGTCCTCAGGAGTGATACCTTAGGCAAGGGTGCGTTTGTACCCAATGACATAACCATTGGTGGTGGTTCAGATCATGCCAGCTTTATCCTTCTAACAGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGTCAGGTTTGCTTGACTGTGATTTTGGCCCAGGTAGGAGCAGATGTTCCAGCAGAAAGTTTTGATTTGTCACCTGTTGATCGAATTTTTGTTCGAATGGGGGCCAAAGATAATATAATGGCAGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACGGCAACAATGCTGTCATCAGCCACTCGTAACTCATTGGTGGCTCTGGATGAGCTTGGGCGAGGGACTGCAACTTCTGATGGACAAGCAATTGCGGAAGCCGTATTAGAACATTTTGTGCGGAAGGTGCAGTGTCGTGGATTGTTTTCTACCCATTATCATCGATTAGCTGTAGATTATCTCAAAGATCCCAAGGTCTGTCTCAGCCACATGGCATGCCAAGTTGGTGGTGGAATTGCAGGTTTAGACGAAGTCACCTTTCTTTACAGGCTTACGCCTGGTGCTTGCCCCAAGAGCTATGGTGTTAACGTTGCTCGGATAGCTGGACTTCCAACTTCTGTGCTTCAGAAAGCTGCTGCCAAGTCTGGAGAATTTGAGGCCAGTTATGGTAAATGCAGAAAGGTGTCTTCTGAAACAAACTATCCCAGTAAAAACTGGGTTGACGAGATAGCTGCTATCATACAAAAATTGACCAAAGTTGCTACCAATTTGAGTTTCCAGGAAACCCTTTGCATTGATTTCTTAAGGGAACTTCAGGATAAAGCACGAGAATCGATGCAGCGATGTTAA	3876	0.4376	MGPSRRNSNGRSPLVNQQRQITSFFTKSPSPSPTVAKSNQESNPNHASDTNPNPSSTTLTPSPLNPKSNKSLLVIGSSISPPSASSSLYGKEVVGQRIKVYWPLDKAWYEGSIISFDKNTSKHVVRYFDDEEEESLNLSEEKIEWLQESSTKKLKRLRRGFPDIRKMEIDEEELKEESNKGEEEKEHDNVNDDDDDDDSNDEDWGKNAASLEEAGDGEEDTDLEDEEDVAESAKGKKTEAKKRKLSATEKLKPEKKSKSGVEVCKGSFKLSVLEPATNLEIKKTSSSADNVSFTETSERFACRESQKLRFLKVDRRDAKRRRPGDENYDSRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGDQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQLEIRRKEKGSKDKVVRREICAVVTKGTLTDGELLSANPEAAYLMALAEHNENLPNEISEHTYGVCIVDIATSRVILGQFKDDLDCSALCSILSEIRPVEIVKPAKLLSAETERALLKHTRNPLVNELVPGVEFWDAGKTVDQLKQIYGNTNDASVEDNGLNCLPDVLQELVKSGDNSRSALSALGGALYYLKQAFLDERLLRFAQFELLPCSGFGDLASKHYMVLDVAALENLEIFENSRNGDSSGTLYAQLNQCVTSFGKRLLKTWLARPLCHVESIKERQEAVAGLKGVNLPSALEFRKALSKLPDMERLLARIFCSSEASGRNANKVILYEDAAKKQLQEFIAALRGCEQMLQACSSLGDILNHVQSRQLHHLLTPGKGLPDVCMELNHFKDAFDWVEANGSGRIIPHEGVDTEYASACKAVKDIESSLLKHLKEQRELLGDTSIAYVSVGKDVYLLEVPENLSRNIPRDYELRSSRKGFFRYWTPDIKIYLKELSQAELERESLLKNTLQRLIGRFCENHTKWKQLVSATAELDLLISLAIAGDYYEGPTCRPTFVGTLCTKEAPYLHAKSLGHPVLRSDTLGKGAFVPNDITIGGGSDHASFILLTGPNMGGKSTLLRQVCLTVILAQVGADVPAESFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTATSDGQAIAEAVLEHFVRKVQCRGLFSTHYHRLAVDYLKDPKVCLSHMACQVGGGIAGLDEVTFLYRLTPGACPKSYGVNVARIAGLPTSVLQKAAAKSGEFEASYGKCRKVSSETNYPSKNWVDEIAAIIQKLTKVATNLSFQETLCIDFLRELQDKARESMQRC*	1292

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu1g2199	1291	PIRSF	Msh6	2	1273	IPR017261	GO:0006298\|GO:0030983
Pvu1g2199	1291	Coils	Coil	223	243	-	-
Pvu1g2199	1291	Pfam	MutS family domain IV	841	930	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Pvu1g2199	1291	SUPERFAMILY	Tudor/PWWP/MBT	93	133	-	-
Pvu1g2199	1291	Coils	Coil	164	184	-	-
Pvu1g2199	1291	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	995	1228	IPR027417	-
Pvu1g2199	1291	MobiDBLite	consensus disorder prediction	166	187	-	-
Pvu1g2199	1291	MobiDBLite	consensus disorder prediction	229	258	-	-
Pvu1g2199	1291	SMART	TUDOR_7	90	149	IPR002999	-
Pvu1g2199	1291	Pfam	MutS domain I	347	459	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Pvu1g2199	1291	Gene3D	MutS, connector domain	468	647	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Pvu1g2199	1291	Gene3D	-	89	145	-	-
Pvu1g2199	1291	Gene3D	DNA repair protein MutS, domain I	302	463	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Pvu1g2199	1291	MobiDBLite	consensus disorder prediction	214	228	-	-
Pvu1g2199	1291	Gene3D	-	983	1261	IPR027417	-
Pvu1g2199	1291	Pfam	MutS domain V	1037	1226	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Pvu1g2199	1291	Gene3D	-	817	948	-	-
Pvu1g2199	1291	SMART	DNAend	671	1012	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Pvu1g2199	1291	MobiDBLite	consensus disorder prediction	1	70	-	-
Pvu1g2199	1291	SUPERFAMILY	DNA repair protein MutS, domain II	465	666	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Pvu1g2199	1291	Coils	Coil	919	939	-	-
Pvu1g2199	1291	MobiDBLite	consensus disorder prediction	166	258	-	-
Pvu1g2199	1291	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH6	249	1261	-	-
Pvu1g2199	1291	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	249	1261	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Pvu1g2199	1291	SUPERFAMILY	DNA repair protein MutS, domain I	332	455	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Pvu1g2199	1291	Pfam	MutS domain III	657	972	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Pvu1g2199	1291	SMART	mutATP5	1033	1225	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Pvu1g2199	1291	MobiDBLite	consensus disorder prediction	188	202	-	-
Pvu1g2199	1291	Gene3D	-	651	972	-	-
Pvu1g2199	1291	Pfam	MutS domain II	470	623	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Pvu1g2199	1291	SUPERFAMILY	DNA repair protein MutS, domain III	654	975	IPR036187	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g2199	Pvu-Chr1	47589113	47598056	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g2199	K08737		-	gmx:100811104	2081.22

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g2199	1	47589113	47598056	Pvu1g2199	1	47589113	47598056	ECH