Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2173 ATGGCCTCTGCATCCTCCATGTCAGTTTCTTTAGAATGCGTGAACGCCTGCAAGCTGTGGAGAGGGGACGGGAGCGGAAGATTTGACTGTAGTCTTCTTTCGTGCGCGTGGAAAGCTCCGAGGGCTCTCACCGGCTTTCTTGCGAGCACTGCTCATCCTCCTCACCAGTGTTCGGACTTGTCCAATGGGCGTAATGGACGACGGAACCGGTATAATTTTGGATGTGAAGCCTTTAGTGTTGGTGGTTCGTGTCCCGATGAACCACTTGATATTGTACTTTTTGAAGAACTGTCTAGATCAAACATGTCTCAAGTTGCTCCTAGAAGATGGCAATTATGTTGTTCTTCAGCGTTCCCTTCGAACACTGCCACCGAGTTTTCCCCAAAAAGTTTGTGGGAGGACCTTAAACCTGCTATTTCGTACCTGTCTTCTAAAGAACTGGAGTTAGTCTACAATGCTTTTATGATGGCGTTTAAAGCTCATGATGGTCAGAAAAGACGCAGTGGTGAACCCTTCATCATTCACCCAGTCGAGGTTGCTCGTATTCTTGGAGAACTTGAACTTGATTGGGAGTCAATTGCTGCTGGATTACTTCATGATACAGTTGAGGATACAAATGTTGTTACTTTTGAGAGGATAGAGGAGGAGTTTGGTGCAACCGTACGCCACATTGTGGAAGGAGAGACCAAGGTATCAAAACTTGGAAAGTTGAAGTATAAGAATGAAAATGATTCCGTTCAAGATGTGAAAGCAGAAGATCTTCGACAAATGTTTCTGGCTATGACAGAGGAGGTTCGTGTTATAATTGTCAAATTAGCAGACAGGTTGCATAACATGCGCACGCTATCACATATGCCTCCACATAAACAGACTAGCATTGCATTGGAGACATTGCAGGTATTTGCTCCTTTGGCGAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTATCATTTATGTACACAAACGCGGAAGACTATGCTAGGGTGAAGAGAAGAGTAGCAGAGCTATACAAAGAACATGAGAAAGAACTTTTGGAGGCAAACAAAATATTAATGAAGAAAATCCAAGATGATCAATTTTTAGACCTTCTAACTGTTAAAATGGAAGTCCGTGCTGTATGTAAAGAGCCTTACAGTATCTATAAAGCGGTTCTCAAATCAAAAAGTTCAATCAGTGAGATTAACCAAGTTGCACAGCTGCGTATTGTTATTAAACCAAAGCCATGCGTTGGGGTTGGGCCTTTAAGCAATCCACAGCAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCCAAACCAAATGGCTACCAGAGTCTCCATACCACTGTGATTCCTTTTTTGTACGAAAGCATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCCCATTATAGTGGGAGAGAATTTGTCACAGGCTTGGTTGGAAGTGCAACACCAAGTAGTAAAAGCTCAAGAGGGAAGACAGTTTGTCTTAACAATGCCAATATTGCTCTCAGAATTGGCTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTGGACACTATTACAAGAGATCTGCTGGGTAGTCGTGTCTTTGTGTTCACACCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCAAGTGTCATTGATTATGCTTATATGATACACACGGAAATAGGCAACAAGATGGTAGCTGCAAAGGTCAATGGAAATCTTGTTTCTCCCTCACATGTACTTGCAAATGCAGAAGTTGTGGAGATAATCACATATAATGCACTTTCCAGCAAATCAGCTTTTCAGAGGCATAAACAGTGGTTGCAACATGCTAAAACACGGAGTGCGAGACACAAAATAATGAAGTTTCTGAGGGAGCAAGCTGCACGCTCTGCTTCTGATATCACTACGGAAGCAGTCAATGACTTTGTTTCTGATTCCGAGGGGGATAGTGAATCTGAAGAACTATCAAAAGGTTCCAGTGGTTCCAAATATCCGTGGGGTAAAACGTTTGTGAATGGAGAGGAAATATCAACTTCAGCAAGAAGTGAGACTGTCCATAGTAAGAATGGAAGTGTTTGGACCCCTAAGGTCAACGGGAAACATAATAAGCATGTGCAGCATGAAAGTTTCAACGGAAAAGGGGAGATGTTACTGCAGGGTGACCTTGTTGCTAAGATGATTCAAGTTAACATTCCAAAATATAAGGAAGTCCTGCCAGGTTTAGAAAGCTGGCAAGCCCAGAAAATTGCTTCTTGGCACAATATGGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGTATTGACCGAAGAGGCATGATGGCTGAGGTCACTACAGCATTGTCCACTGCAGGCATAGCCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGGTATTTCACGTTGAAGGAAATTTAGAAAATTTGGTCAGTGCTTGCTCTAAAGTAGATCTGATATTGGGTGTTTTGGGATGGTCTACCGGTTGCAGCTGGCCAAGCTTAATGGAAGACCGTGGCGTTCTCGAATGCTAG 2655 0.4309 MASASSMSVSLECVNACKLWRGDGSGRFDCSLLSCAWKAPRALTGFLASTAHPPHQCSDLSNGRNGRRNRYNFGCEAFSVGGSCPDEPLDIVLFEELSRSNMSQVAPRRWQLCCSSAFPSNTATEFSPKSLWEDLKPAISYLSSKELELVYNAFMMAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIALETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYARVKRRVAELYKEHEKELLEANKILMKKIQDDQFLDLLTVKMEVRAVCKEPYSIYKAVLKSKSSISEINQVAQLRIVIKPKPCVGVGPLSNPQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSSKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGASVIDYAYMIHTEIGNKMVAAKVNGNLVSPSHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSASDITTEAVNDFVSDSEGDSESEELSKGSSGSKYPWGKTFVNGEEISTSARSETVHSKNGSVWTPKVNGKHNKHVQHESFNGKGEMLLQGDLVAKMIQVNIPKYKEVLPGLESWQAQKIASWHNMEGHSIQWLSVVCIDRRGMMAEVTTALSTAGIAICSCVAEIDGGRGMAVMVFHVEGNLENLVSACSKVDLILGVLGWSTGCSWPSLMEDRGVLEC* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2173 884 ProSiteProfiles HD domain profile. 172 279 IPR006674 -
Pvu1g2173 884 Gene3D Beta Polymerase, domain 2 327 481 IPR043519 -
Pvu1g2173 884 SUPERFAMILY Nucleotidyltransferase 329 499 IPR043519 -
Pvu1g2173 884 MobiDBLite consensus disorder prediction 712 731 - -
Pvu1g2173 884 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 1 884 - -
Pvu1g2173 884 CDD HDc 170 301 IPR003607 -
Pvu1g2173 884 Gene3D - 797 863 - -
Pvu1g2173 884 ProSiteProfiles ACT domain profile. 797 868 IPR002912 -
Pvu1g2173 884 Pfam HD domain 153 310 - -
Pvu1g2173 884 CDD TGS_RSH 567 625 IPR033655 -
Pvu1g2173 884 ProSiteProfiles TGS domain profile. 562 625 IPR004095 -
Pvu1g2173 884 SUPERFAMILY ACT-like 797 856 IPR045865 -
Pvu1g2173 884 MobiDBLite consensus disorder prediction 712 735 - -
Pvu1g2173 884 CDD NT_Rel-Spo_like 369 489 IPR007685 GO:0015969
Pvu1g2173 884 Gene3D Hypothetical protein af1432 130 325 - -
Pvu1g2173 884 SMART hd_13 168 288 IPR003607 -
Pvu1g2173 884 Pfam Region found in RelA / SpoT proteins 379 495 IPR007685 GO:0015969
Pvu1g2173 884 SUPERFAMILY TGS-like 553 625 IPR012676 -
Pvu1g2173 884 Gene3D - 559 634 IPR012675 -
Pvu1g2173 884 SMART RelA_SpoT_2 379 501 IPR007685 GO:0015969
Pvu1g2173 884 SUPERFAMILY HD-domain/PDEase-like 137 325 - -
Pvu1g2173 884 Pfam TGS domain 566 625 IPR004095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2173 Pvu-Chr1 47370772 47378590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2173 182 497 EF-hand Containing Proteins AT3G17470 30.982 1.36e-37 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2173 K00951 - gmx:100814134 1617.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2173 1 47370772 47378590 Pvu1g2173 1 47370772 47378590 ECH