Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2169 ATGACTTTTTCCCTCTTTTCTTCTGTCCTTTTCCTTCTTTCTGCCTTTTCCACCCTTTCTCACTCCCTCACTCCCCTTTCCCACCACCACCCTCACTCTGCCATACACAACTACAGAGATGCTCTCACAAAATCCATCATCTTCTTTGAGGGCCAGAGGTCAGGGAAGCTCCCTTCTAACCAGAGGATGTCTTGGAGGAGGGACTCTGCTCTATCTGATGGCTCTGCCATGAATGTTGATTTGGTTGGAGGGTACTACGATGCTGGGGACAATGTCAAGTTTGGTTTTCCCATGGCCTTCACCACCACCATGCTTTCTTGGAGTGTTATTGAGTTTGGTGGGGTGATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGTTGGGGCACAGATTATCTTCTTAAAGCTACTGCTCATCCAGACACCATTTATGTCCAGGTGGGAGATGCGGAGAAGGACCACGCTTGTTGGGAGAGACCTGAGGACATGGATACCCCAAGAAGTGTTTTTAAAGTAGATAAGAACAACCCTGGTTCAGATGTGGCTGCAGAAACTGCTGCGGCCCTTGCAGCTGCTTCTCTGGCTTTCAAGAAAACTGACCCAGCCTATTCCAAGACTTTGGTTAGGAGGGCTATTCGTGTTTTCCAGTTTGCTGATAAATATAGAGGATCCTACAGCAATGGGTTGAAGTCCGTTGTGTGCCCTTTCTATTGCTCCTACTCGGGTTATCAGGATGAGCTGTTGTGGGGAGCTGCTTGGCTTCACAAGGCTACTAAGAACCCAATGTACCTAAACTACATTAAACTCAATGGACAAACCCTTGGGGCTGCAGATTCTGACAATATCTTTGGATGGGATAACAAGCATGTTGGAGCAAGGATACTGCTTTCCAAGGAATTTCTTGTTCGGAAGGTGCAATCCCTACATGATTACAAGGGGCATGCAGACAATTTTATCTGTTCTGTTATCCCTGGTTCCTCCTCTTCCCGATTCACCCCAGGTGGACTTCTGTTCAAGATGGGTGATAGCAATATGCAGTATGTGACTTCCACCTCGTTCATACTCTTAACTTATGCTAAATATTTGACCAAAGCCCATGTGGTTGTGAACTGCGGTGGAACCACAGTGACTCCAAAGAGACTACGAGCTATAGCCAAAAAACAGGTGGATTACTTGTTAGGAGAGAACCCCTTGAAGATGTCCTACATGGTGGGGTATGGACCACGGTATCCGCGAAGGATACACCACAGGGGCTCAGCAGGGTTCAGTGTGATGAATTCAGAATCACCCAATCCCAACATTCTAGTGGGTGCCGTTGTTGGAGGACCGGATCTGAATGATGGGTTCCCTGATGAACGGTCAGATTACGAGCAATCAGAACCTGCTACTTATATCAACGCACCTCTTGTGGGATCACTTGCTTATCTCGCACACTCCTTTGGCCAACTCTAG 1455 0.4756 MTFSLFSSVLFLLSAFSTLSHSLTPLSHHHPHSAIHNYRDALTKSIIFFEGQRSGKLPSNQRMSWRRDSALSDGSAMNVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGVMKGELQNAREAIRWGTDYLLKATAHPDTIYVQVGDAEKDHACWERPEDMDTPRSVFKVDKNNPGSDVAAETAAALAAASLAFKKTDPAYSKTLVRRAIRVFQFADKYRGSYSNGLKSVVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKLNGQTLGAADSDNIFGWDNKHVGARILLSKEFLVRKVQSLHDYKGHADNFICSVIPGSSSSRFTPGGLLFKMGDSNMQYVTSTSFILLTYAKYLTKAHVVVNCGGTTVTPKRLRAIAKKQVDYLLGENPLKMSYMVGYGPRYPRRIHHRGSAGFSVMNSESPNPNILVGAVVGGPDLNDGFPDERSDYEQSEPATYINAPLVGSLAYLAHSFGQL* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2169 484 Pfam Glycosyl hydrolase family 9 38 473 IPR001701 GO:0004553|GO:0005975
Pvu1g2169 484 Gene3D - 33 484 IPR012341 GO:0005975
Pvu1g2169 484 PANTHER ENDOGLUCANASE 17 6 484 - -
Pvu1g2169 484 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 450 468 IPR033126 -
Pvu1g2169 484 PANTHER ENDO-1,4-BETA-GLUCANASE 6 484 - -
Pvu1g2169 484 SUPERFAMILY Six-hairpin glycosidases 36 482 IPR008928 GO:0005975
Pvu1g2169 484 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 392 418 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2169 Pvu-Chr1 47306828 47309387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2169 3 480 Glycoside Hydrolase AT1G02800 74.442 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2169 K01179 - gmx:100793900 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2169 1 47306828 47309387 Pvu1g2169 1 47306828 47309387 ECH
Pvu1g2169 1 47306828 47309387 Pvu7g2246 7 45709910 45712694 PCT