Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2160 ATGGAACCCTCTACAAAAATCTTCTGGGTGTTGGTTCTATGCGTAGTTGTAATGGCACACCACGCAACTGCACTGGGAATACTAAAGGAAATTAATCCACTAATCGGTGAGGAACCATTAAGAGGAAAGAGTCTAATCAACAAGGTATGCGCGTTTTCCCCAAGCAGAGGCCTATGCGTTGAGGTCCTCTCTTCCGACAAACTCAGAAGCCCTACCGCAAACCTCAAAGACTTGGCAATGATTTCCCTTAGGTTTGCTGCTACAAACGCTTCCGACATCCTCGGCGACGCCAAAACGCTCATTGACGACGACAGCCTAGAACCTGGTATCCAACAAGGTTTGGCTGATTGCAAGGAGAACATCTTGGACGCAGAGAGCCAACTGGAGGACACCATTGCTACCTTGATGATTGATTCTAAAGCTGATGCACAACGTTGGCTCAGAGCTGCCTTGGCTGCCATCGACACTTGCGATGCCTCCATCCCCGGAGACGATGATATTCTCTCTGTGAAGAGCGTCATGTTCCGCAAGCTCTGTAACATTGCCATCGTCGTCAACAAGCTCCTCGCTAATCCAACTATATTACAGAAATCTTCGCCGTTGTGGATCAATCCATATATATCGTTTCCTGTGTAA 636 0.478 MEPSTKIFWVLVLCVVVMAHHATALGILKEINPLIGEEPLRGKSLINKVCAFSPSRGLCVEVLSSDKLRSPTANLKDLAMISLRFAATNASDILGDAKTLIDDDSLEPGIQQGLADCKENILDAESQLEDTIATLMIDSKADAQRWLRAALAAIDTCDASIPGDDDILSVKSVMFRKLCNIAIVVNKLLANPTILQKSSPLWINPYISFPV* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2160 211 SMART PMEI_2 41 185 IPR006501 GO:0004857
Pvu1g2160 211 Coils Coil 114 134 - -
Pvu1g2160 211 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 1 189 - -
Pvu1g2160 211 TIGRFAM PME_inhib: pectinesterase inhibitor domain 41 189 IPR006501 GO:0004857
Pvu1g2160 211 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 189 IPR035513 -
Pvu1g2160 211 Pfam Plant invertase/pectin methylesterase inhibitor 44 183 IPR006501 GO:0004857
Pvu1g2160 211 PANTHER PECTINESTERASE 1 189 - -
Pvu1g2160 211 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 189 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2160 Pvu-Chr1 47251897 47252927 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2160 - - pvu:PHAVU_001G208600g 414.846