Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2147 ATGGCTTCGGGCTTGGTTTTCCGAGGGCACGAGGCACAACCTGTGAACGACGCCGATTTCCCCAAGCCGCAAAAGCCATGGTTTTTCCTCCGCTACATCCTCCGCGAGCAGCGGCTCCATTTCCTCTTCCTCGGCGTTCTCCTCGCCTCCGTCTTCTTCTTCTTCCTCCTCCCCTCCTCCTCTTCTCCTCCCGTCCGGGCCCACGACCCATTCCCCGCTTCTTTCTTGGCCCGCGACGACTTAACGCTCTGGCCCACCACCAACACCCGAAGCTATGACGTGGCGGTGCATTCCGTGGGGAAGATCCCCCTAGGGATTAAACGGAAGGGGCTCCGGGTTGTGGTGACGGGCGGGGCCGGGTTCGTCGGGTCACACTTAGTGGATCGGTTGATTAGCCGGGGAGACAGCGTGATTGTGGTGGACAATTTCTTCACAGGGAGGAAAGAAAACGTGATGCACCATTTTGGGAATCCGAATTTCGAACTTCTCCGACACGACGTCGTCGAGCCTCTCCTCTTGGAAGTCGACCAGATCTACCATCTTGCTTGCCCTGCCTCCCCTGTCCATTACAAGTTCAATCCCACCAACGTGGTGGGCACGTTGAACATGTTGGGGCTGGCTAAAAGAATTGGCGCCAGGTTCTTGTTAACCAGTACCAGCGAGGTTTATGGAGATCCTCTGCAGCACCCTCAGAAGGAGACTTATTGGGGCAACGTCAATCCCATTGGTGTTCGAAGCTGCTACGACGAGGGAAAGCGTACGGCCGAAACGTTAGCCATGGATTACCACAGAGGAGCCGGTGTCGAGGTGAGAATAGCTAGGATTTTCAACACCTACGGGCCTCGAATGTGCTTAGACGATGGTCGCGTTGTTAGTAACTTCGTTGCTCAGGCACTAAGGAAAGAGGCTTTGACCGTTTATGGGGATGGGAAGCAAACTAGAAGTTTCCAATACGTTTCTGATTTGGTGGAGGGGCTGATGCGCCTTATGGAAGGAGAACACGTGGGACCTTTCAATCTTGGAAATCCTGGTGAATTCACCATGCTTGAACTTGCCAAGGTGGTACAAGAAACCATAGATCCAGAGGCTAAGATAGAGTACAGGCCAAACACAGAGGATGACCCACACAAGAGAAAGCCTGATATTACTAGGGCCAAGGAACTACTAGGCTGGGAACCCAAGGTGGACCTACGCAAGGGACTCCCTCTAATGGTTTCTGACTTCAGACAACGCATTTTTGGGGACCAAAAGGAAGGAGCAACCTCTACCTAA 1272 0.5354 MASGLVFRGHEAQPVNDADFPKPQKPWFFLRYILREQRLHFLFLGVLLASVFFFFLLPSSSSPPVRAHDPFPASFLARDDLTLWPTTNTRSYDVAVHSVGKIPLGIKRKGLRVVVTGGAGFVGSHLVDRLISRGDSVIVVDNFFTGRKENVMHHFGNPNFELLRHDVVEPLLLEVDQIYHLACPASPVHYKFNPTNVVGTLNMLGLAKRIGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEALTVYGDGKQTRSFQYVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAKVVQETIDPEAKIEYRPNTEDDPHKRKPDITRAKELLGWEPKVDLRKGLPLMVSDFRQRIFGDQKEGATST* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2147 423 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 109 413 IPR036291 -
Pvu1g2147 423 Gene3D - 228 413 - -
Pvu1g2147 423 Gene3D - 107 227 - -
Pvu1g2147 423 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE 4 1 419 - -
Pvu1g2147 423 CDD UGD_SDR_e 112 409 - -
Pvu1g2147 423 Pfam GDP-mannose 4,6 dehydratase 115 402 IPR016040 -
Pvu1g2147 423 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 419 IPR044516 GO:0042732|GO:0048040|GO:0070403
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2147 Pvu-Chr1 47158261 47164365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2147 21 401 Miscellaneous Gene Families AT4G00110 25.754 4.16e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2147 K08678 - gmx:100782935 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2147 1 47158261 47164365 Pvu1g2147 1 47158261 47164365 ECH