Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2136 ATGGAGAGCAGTGCGGCCATGGATGTTGAGGAGCAACCTTCACCCAACCCCACTAACGTAAAACGCTTCGGCCTTAAAAACTCTATTCAAACTAACTTCGGCGACGACTATGTTTTCCAAATTGTCCCAAAGGATGATTGGAGTGCAATGGCGGTTTCACTGTCAACGAACGCAGTGAAACTATATTCACCTATGGCGGGTCAATATTTCGGAGAGTGCAAGGGTCACACCGCAACCATCAATCAGATTTTATTTTCGGGTACTTCACATCACCAAGTTTTGTGTTCGTGTTCTTCTGATGGCACTGTCAGAGCTTGGGACACACGCACATTTCAGCAGGTTTCTTGCATCAATGCTGGTTCTTCGCAGGAGGTTTTCAGCTTCTCTCTTGGAGGAACTAGTGGGAATTTAGTTGCTGCCGGGTGTAAATCGCAGATACTGTTCTGGGATTGGAGAAATATGAAGCAAATTGCATGCCTGGAAGACTCCCATGTGGAAGATGTCACTCAGGTTCATTTTGTCCCCAACGAACAAGGAAAGCTTATTTCTGCTTCAGTAGATGGGTTGATCTGCACATTTGATACTACTGGAGATATCAATGATGATGATCATCTAGATTCAGTGATTAATATGGGGACTTCAATTGCAAAGGTGGGGATTTTTGGAGAGAGTTACCAGAAGCTTTGGTGTTTAACACATATTGAAACCCTGGGTATCTGGAACTGGAAAGATGGTAGAAATGAAGGAAACTTCTCAGATGCACGTACTTTAGCTTCCGAAAGTTGGAATTTGGATCATGTAGACTATTTCATTGATTGTCACTACTACAGAGAATCTGAAAAACTATGGGTGATTGGTGGCACTAATGCTGGTACTATGGGCTACTTTCCTGTAAATTACAAAGGGGTGGCAACAATTGGAGCTGCAGAAGCAATTCTTGAAGGTGGGCACACAAGTGTTGTTAGGAGTGTTTTACCCATGTCAAAAATTCATTCTAATAGTCCTACCCAAGGCATTTTTGGATGGACTGGTGGGGAAGATGGTCGACTATGTTGTTGGCTCTCTGATCATTCCTCTGAATCAAATCGATCTTGGATTTCAAGCACATTGATTACGAGGCCAGAAAAAACTCGCAAGAAAAATCGTCATCAACCCTACTAG 1161 0.4315 MESSAAMDVEEQPSPNPTNVKRFGLKNSIQTNFGDDYVFQIVPKDDWSAMAVSLSTNAVKLYSPMAGQYFGECKGHTATINQILFSGTSHHQVLCSCSSDGTVRAWDTRTFQQVSCINAGSSQEVFSFSLGGTSGNLVAAGCKSQILFWDWRNMKQIACLEDSHVEDVTQVHFVPNEQGKLISASVDGLICTFDTTGDINDDDHLDSVINMGTSIAKVGIFGESYQKLWCLTHIETLGIWNWKDGRNEGNFSDARTLASESWNLDHVDYFIDCHYYRESEKLWVIGGTNAGTMGYFPVNYKGVATIGAAEAILEGGHTSVVRSVLPMSKIHSNSPTQGIFGWTGGEDGRLCCWLSDHSSESNRSWISSTLITRPEKTRKKNRHQPY* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2136 386 Pfam WD domain, G-beta repeat 68 107 IPR001680 GO:0005515
Pvu1g2136 386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 73 110 - -
Pvu1g2136 386 SUPERFAMILY WD40 repeat-like 38 353 IPR036322 GO:0005515
Pvu1g2136 386 Gene3D - 43 124 IPR015943 GO:0005515
Pvu1g2136 386 SMART WD40_4 110 150 IPR001680 GO:0005515
Pvu1g2136 386 SMART WD40_4 66 107 IPR001680 GO:0005515
Pvu1g2136 386 SMART WD40_4 153 194 IPR001680 GO:0005515
Pvu1g2136 386 PANTHER UNCHARACTERIZED 21 386 IPR039328 -
Pvu1g2136 386 ProSitePatterns Trp-Asp (WD) repeats signature. 94 108 IPR019775 -
Pvu1g2136 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 73 116 IPR001680 GO:0005515
Pvu1g2136 386 Gene3D - 125 377 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2136 K24758 - gmx:100794786 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2136 1 47053926 47057918 Pvu1g2136 1 47053926 47057918 ECH