Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2124 ATGAACGATAGAGTGAGGAGCGTGATTTTTCTGCTTCAGAATTTTTGTGACAGTCAGAAGCAAGTTGGACAGATCAAAGCGCAACTCATCCGCCGTAACCTCTATCCAAACACCAGAATCGCCGAGCACTTCATCGGCGCGTGCTATTCACACGGCCTTATCAACTCCGCTCTTCGTCTCTTCACCACCCTCCCTCCTTCTCCCCACGTTTACATCTTCAACACCCTCATCAGAGTCTTCTCCCAATCCCGAATCCCACACACCCCTCTCTTAATCTACTCCCACATGCGCCGCAACAACGTTCTCCCCAACAACTTCACTTTCCCGCCTCTCTTCAAGTCCCTCTCCGACGCCCGCCACCTCACCCAAGCCCGCTGCGTCCACACCCACGTTCTCAAACTCGGCCACCTCCAAGACCTCTTCGTTGGCAACGCCCTTCTCGACGTCTACGCCTCGAGCCGCTACGTGGGGTTGTGTCGCAGCCTGTTTGATGAAATGCTTCAGAGAGACGTTGTTTCCTGGAGCGTGTTGATTGCCGGGTACAACAAGGTTGGGAACTATGATGATGCCTTGGTTGTGTTTGAACAAATGCAGTATGCGGGTTGTGTGCCTAATAGGGTGACGATGATCAACGCGTTGCATGCTTGCGCTCACTCTGGTAATGTTGAAATGGGGACGTGGATACATGGGGTTGTAAAAAGGGAGGGTTGGGAATTGGATGTCATATTGGGGACGGCTTTGGTTGACATGTATGGGAAGTGTGGGAGACTTGAAGAGGGGGTAAGGGTGTTCTGGAGCATGAAGGAAAGAAATGTGTTTACTTGGAATGCGGTTGTTAAAGGGTTAGCTTTGGCTAAGAGTGGACAAGAGGCGATTTGGTGGTTTAACAGAATGGAGGAGGAGGGTGTTAGAGCGGATGAAGTGACTGTGTTGGCGGTTTTATCTGCGTGCAGTCACTCGGGTTTGGTGGACAAGGGTAAAGAGGTTTTTGGTTTGTTGGTTGATGGGAGGTATGGGTTTTGTGCTAATGTTAAACACTATGCTTGTATGGTTGACGTGTTGGCGCGTTCTGGTCGTTTGCATGAGGCTGTTGAGTTGATGAGGCGTATGCCTTTTGGACCCACCAAAGCTATGTGGGGATCATTGTTATTTGGTTCTAAAGCTCAGGGTGACTTGGAGTTGGGCCTGCTGGCGGCTGAAAAGCTCATTGAATTGGAGCAGGAGAACTCTACCTATTATGTTCATCTGTCCAATATGTATGCTGCAATGGGAAGATGGGGTGATGTTGAGAATGTGAGAGGGGTGATGAAGGATAGGCAACTGACTAAGGACTTGGGGTGTAGTTCTGTGGAGGTGGAACACCAAAGGCATGTAAACGAATTTTTGGCGTAG 1392 0.4993 MNDRVRSVIFLLQNFCDSQKQVGQIKAQLIRRNLYPNTRIAEHFIGACYSHGLINSALRLFTTLPPSPHVYIFNTLIRVFSQSRIPHTPLLIYSHMRRNNVLPNNFTFPPLFKSLSDARHLTQARCVHTHVLKLGHLQDLFVGNALLDVYASSRYVGLCRSLFDEMLQRDVVSWSVLIAGYNKVGNYDDALVVFEQMQYAGCVPNRVTMINALHACAHSGNVEMGTWIHGVVKREGWELDVILGTALVDMYGKCGRLEEGVRVFWSMKERNVFTWNAVVKGLALAKSGQEAIWWFNRMEEEGVRADEVTVLAVLSACSHSGLVDKGKEVFGLLVDGRYGFCANVKHYACMVDVLARSGRLHEAVELMRRMPFGPTKAMWGSLLFGSKAQGDLELGLLAAEKLIELEQENSTYYVHLSNMYAAMGRWGDVENVRGVMKDRQLTKDLGCSSVEVEHQRHVNEFLA* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2124 463 Pfam PPR repeat family 169 217 IPR002885 -
Pvu1g2124 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Pvu1g2124 463 PANTHER - 8 458 - -
Pvu1g2124 463 Pfam PPR repeat 347 370 IPR002885 -
Pvu1g2124 463 Pfam PPR repeat 308 333 IPR002885 -
Pvu1g2124 463 Pfam PPR repeat 273 303 IPR002885 -
Pvu1g2124 463 Pfam PPR repeat 245 272 IPR002885 -
Pvu1g2124 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 270 IPR002885 -
Pvu1g2124 463 Pfam E motif 391 451 IPR046848 -
Pvu1g2124 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Pvu1g2124 463 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 8 458 - -
Pvu1g2124 463 Gene3D Tetratricopeptide repeat domain 337 459 IPR011990 GO:0005515
Pvu1g2124 463 Gene3D Tetratricopeptide repeat domain 86 225 IPR011990 GO:0005515
Pvu1g2124 463 Gene3D Tetratricopeptide repeat domain 226 336 IPR011990 GO:0005515
Pvu1g2124 463 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Pvu1g2124 463 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Pvu1g2124 463 TIGRFAM PPR: pentatricopeptide repeat domain 347 370 IPR002885 -
Pvu1g2124 463 TIGRFAM PPR: pentatricopeptide repeat domain 273 306 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2124 Pvu-Chr1 46993796 46995187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2124 92 457 Glycoside Hydrolase AT3G49170 32.973 8.48e-60 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2124 - - gmx:102664320 758.059