Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2112 ATGGCCTTTAGGCGAAATAAATTGATTAGAGAGCCCAAACAAGAACCCAACAGAATCAGTGTCTCATCTCATCCAAACACTGATGCGAATAACCACTCTGCACTAATGTACGCTCCTTTCGCTTCTCTATCCAGTTACTCAGTGGCCATGAATAGCTTAACGGCGAGTTTCACAGCTCGAATATGCAACACGCGCCGCGACCTACTCCCTATGCGACGCCGTTCCTCATTCGGCCGCGTCGCCACCAAACTCGCACATCCAAGAATTGTTTGCATGGCGGAACCTTATCTGATAACGAAGTTGGAATCTGCCGAGAAAACCTGGAAAGAGTTATCGGTCAAGCTTGCTGATCCAGACGTTGTGTCTGATCCAAAGGAGTATCAGAAGTTAGCACAATCAGTGGCAGAGCTTGATGAGGTTGTGTCCATCTATAGGAAATTTAAAGACTGTGAGAAGCATCTAGAAGAAGCCAAAGCTTTAGCGAAGGATGGAGGAAATGACGAGGATATGGTGGAAATGATATCTTTTGAAATCGACTTGTTGTCCAAGCAACTAGCTGAGCTTGAGGACAACCTTAAGGTGCTACTGCTTCCCAGTGATCCTCTAGATGCTAGAAACATTATGATTGAAGTACGAGCAGGCACTGGTGGTGATGAGGCTGGAATATGGGCTGGTGATCTTGTCCGAATGTATGAAAGATATAGTGAAAGGAATTCTTGGAAGTATTCTCTCGTCTCAAGCTCTGCGGCAGAAAAAGGAGGATTCAAAACTTATGTAATGGAGATAAAAGGCAATCGTGTTTACAGTAAATTGAAATATGAATCTGGTGTCCACCGAGTTCAACGTGTTCCTCTAACAGAAGCACAGGGCCGGGTACATACTTCTACTGCAACAGTGGCTATCATGCCAGAGGTTGATGAAGTTGAAGTCGTAATTGACCCCAAAGACATTGAACTGACGACGGCACGTTCTGGGGGTGCCGGAGGTCAGAATGTTAACAAGGTTGAAACAGCCATCGATCTGGTCCATAAACCAACGGGAATCCGCATCTTTTGTACTGAAGAAAGAACACAACTTAAAAACAAGAATCGTGCTTTTCAGTTGCTCCGAGCAAAACTATATGAGATAAAGCTAAGGGAGCAGCAGGAGTCACTACGAAATCAAAGGAAATCACAGGTCGGTACAGGTGCACGAGCAGAAAAAATTCGGACATACAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAGACAAACTATGAGCTCACCTCTTTTCTTGATGGTGACATAGAAGATGCTGTTCAGTCTTGCGCTACAATGGAGCAAAAGGAACTTCTGGAAGAACTTGCTGAATCTGTAGGTGCTACGGCTCGCTGA 1380 0.4486 MAFRRNKLIREPKQEPNRISVSSHPNTDANNHSALMYAPFASLSSYSVAMNSLTASFTARICNTRRDLLPMRRRSSFGRVATKLAHPRIVCMAEPYLITKLESAEKTWKELSVKLADPDVVSDPKEYQKLAQSVAELDEVVSIYRKFKDCEKHLEEAKALAKDGGNDEDMVEMISFEIDLLSKQLAELEDNLKVLLLPSDPLDARNIMIEVRAGTGGDEAGIWAGDLVRMYERYSERNSWKYSLVSSSAAEKGGFKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTEAQGRVHTSTATVAIMPEVDEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLVHKPTGIRIFCTEERTQLKNKNRAFQLLRAKLYEIKLREQQESLRNQRKSQVGTGARAEKIRTYNYKDNRVTDHRLKTNYELTSFLDGDIEDAVQSCATMEQKELLEELAESVGATAR* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2112 459 PANTHER LD18447P 69 457 - -
Pvu1g2112 459 Coils Coil 371 391 - -
Pvu1g2112 459 SMART PCRF_a_2 159 274 IPR005139 GO:0006415
Pvu1g2112 459 Gene3D - 305 400 - -
Pvu1g2112 459 Gene3D - 91 201 - -
Pvu1g2112 459 Gene3D - 209 435 - -
Pvu1g2112 459 SUPERFAMILY Release factor 106 447 IPR045853 -
Pvu1g2112 459 Coils Coil 171 191 - -
Pvu1g2112 459 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 69 457 - -
Pvu1g2112 459 Hamap Peptide chain release factor 1 [prfA]. 97 451 IPR004373 GO:0006415|GO:0016149
Pvu1g2112 459 MobiDBLite consensus disorder prediction 1 27 - -
Pvu1g2112 459 TIGRFAM prfA: peptide chain release factor 1 93 452 IPR004373 GO:0006415|GO:0016149
Pvu1g2112 459 Pfam PCRF domain 105 299 IPR005139 GO:0006415
Pvu1g2112 459 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 323 339 IPR000352 GO:0003747|GO:0006415
Pvu1g2112 459 Pfam RF-1 domain 306 416 IPR000352 GO:0003747|GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2112 Pvu-Chr1 46902351 46909052 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2112 K02835 - gmx:100777225 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2112 1 46902351 46909052 Pvu1g2112 1 46902351 46909052 ECH