Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2111 ATGGGAGTGGTAACAGTTGGTGAATTGAAGCCTAGCATTTCAGGAAAAAGGACCTTTCGTCCAAGCTCCAGCATAAGACATGCCACCGAATGGCCAATATCTGACGTATCTAGTGATCTCACCATCGAGGTAGGAGCATCAGCTTTCGCACTTCACAAGTTTCCTCTCGTTTCTCGGAGTGGAAGAATTCGGAAGCTGCTGCTAGAAGCAAAAGATTCAAAAGTTTTACGCATAAGTCTCCCAAATGTGCCAGGTGGAGCAGAGGCATTTGAGCTAGCTGCCAAATTTTGCTATGGAGTCAATGTTGAGTTCACTCTCTCAAATGTTGCCTTGCTACGTTGCACGGCTCATTTTCTTGAAATGACCGAAGAATTTGCAGAAAAAAACTTAGAATCCAGAGTTGAAGCATACCTAAGGGACACAGTGCTCCCTAACATATCAAGCACAGTATATGTTCTCCACAGTTGTGAGACTCTTCTTCCAATGTCAGAGGAAATAAACCTAGTCAATAAGCTAATCAATGCAATTGCAAACAACGCGTGCAAAGAGCAGCTTACATCTGGATTACTAAAACTTGATCACACTTTCCCTTCCAAAACCACACCAACCATGGAGCCAGAAACACCCTCAGATTGGTGGGGGAAGTCTTTCAATGTTCTTAGTCTTGAGTTCTTCCAACGAGTTGTATCCGTTGTTAAGTCAAAGGGACTAAAACAGGAAATGATCAGCAAGATATTGATGAACTATGCACATGGTTCTCTTCAGGGGATTGGTGTTAGAGACCCCCAAGTGGTGAAAGGAAGTCTTCATGACATGGAATTGCAAAAGAAGCAAAGAGTCGTTGTTGAAACCATAGTTGGCTTACTCCCAACTCACTCAAGGAAAAGCCCTGTTCCAATGGGATTCCTCTCAAGTTTGCTGAAAGCTGCAATAGCAGCACCTGCATCAACTCCTTGCAAATCTGATTTAGAGAGGCGAATTAGTCTTCAACTTGACCAGGCAATTCTTGAAGACATCTTAATCCCAACAAACTCACCCCAAAACACCCACAACACGATGTATGACACTGACTCAATTCTGAGGATCTTTTCTATTTATCTAAACATGGACGAGGAGGATGGAGAAGATAGTGATAACTACATTGATGAAAGCCAAATGTATGATTTTGACAGTCCTGGATCTCCAAAACAAAGCTCAATCACAAAGGTATCGAAATTGCTGGACAGTTATCTAGCTGAAGTAGCTCTAGACTCAAACCTGCTGCCTTCAAAATTCACAGCACTTGCAGAACTACTTCCAGATCATGCACGTGTTGCAAGTGATGGACTCTACAGAGCTGTTGACATCTTCCTTAAGGTTCATCCAAACATGAAGGAGTCAGAGAGGTACAGGTTATGCAAAACCATTGATTGTCAGAAACTATCTCAAGAAGCATGCAGCCATGCAGCACAGAATGAAAGGCTACCAGTGCAGATGGTGGTGCAGGTGCTTTACTTCGAGCAAATGAGGCTTCGAAACGCCATGAATGGAGGGCACAACCAGTTGTTCTTTGGGCAGTTTCCTCAGCGTTCAGGAAGCGGTGCAGGGAGTGGAGCAATTTCCCCTAGAGATAACTATGCATCAGTGAGAAGAGAGAACAGAGAACTGAAGCTTGAAGTAGCAAGAATGAGAATGAGGCTGACTGACTTGGAGAAAGACCATGTGTGTATGAAGCAGGAGCTTGTTAAGTCTCACCCTGCTAACAAGTTGTTCAAATCATTCACCAGAAAGCTGAGTAAGCTGAATGCTCTATTCAGGATAAATAGCATTAAGCCAATTGGTGGGAAGGCTAGTTCAGAAACTCGCTTCCCTTTTCCAAAGCGAAGACGCCACTCCGTTTCATAA 1884 0.4358 MGVVTVGELKPSISGKRTFRPSSSIRHATEWPISDVSSDLTIEVGASAFALHKFPLVSRSGRIRKLLLEAKDSKVLRISLPNVPGGAEAFELAAKFCYGVNVEFTLSNVALLRCTAHFLEMTEEFAEKNLESRVEAYLRDTVLPNISSTVYVLHSCETLLPMSEEINLVNKLINAIANNACKEQLTSGLLKLDHTFPSKTTPTMEPETPSDWWGKSFNVLSLEFFQRVVSVVKSKGLKQEMISKILMNYAHGSLQGIGVRDPQVVKGSLHDMELQKKQRVVVETIVGLLPTHSRKSPVPMGFLSSLLKAAIAAPASTPCKSDLERRISLQLDQAILEDILIPTNSPQNTHNTMYDTDSILRIFSIYLNMDEEDGEDSDNYIDESQMYDFDSPGSPKQSSITKVSKLLDSYLAEVALDSNLLPSKFTALAELLPDHARVASDGLYRAVDIFLKVHPNMKESERYRLCKTIDCQKLSQEACSHAAQNERLPVQMVVQVLYFEQMRLRNAMNGGHNQLFFGQFPQRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVCMKQELVKSHPANKLFKSFTRKLSKLNALFRINSIKPIGGKASSETRFPFPKRRRHSVS* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2111 627 Coils Coil 539 566 - -
Pvu1g2111 627 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 620 - -
Pvu1g2111 627 Pfam BTB/POZ domain 37 123 IPR000210 GO:0005515
Pvu1g2111 627 PANTHER OS12G0117600 PROTEIN 25 620 IPR043454 -
Pvu1g2111 627 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Pvu1g2111 627 SUPERFAMILY POZ domain 22 123 IPR011333 -
Pvu1g2111 627 ProSiteProfiles NPH3 domain profile. 211 503 IPR027356 -
Pvu1g2111 627 Pfam NPH3 family 211 479 IPR027356 -
Pvu1g2111 627 Gene3D Potassium Channel Kv1.1; Chain A 26 142 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2111 Pvu-Chr1 46891462 46895504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2111 1 453 EF-hand Containing Proteins AT2G47860 60.206 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2111 - - gmx:100776688 1165.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2111 1 46891462 46895504 Pvu1g2111 1 46891462 46895504 ECH
Pvu1g2111 1 46891462 46895504 Pvu7g1702 7 39617347 39622056 PCT