Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2090 ATGGCCAGGGGTTCTTCGCCTCACTCTCTAACTTCATCACCCCCTGCCGGATATAAAGTTAAATATGCAAGTGACGACGATCCATCCAGGGAAACTGATCTCTTTCAGGACACCTTAGTGCTCAATAGTCCTTTCACTGAAACGGAGTATGAAAATCTCAATCTGGACACTGAGATTCTAGAGGATTCTGAGCCTGCTGAGGACATGACAACTGGAAAAATGTGCGAGTATGGACAAGTTGTTCTGGATAGCGAGGATGAAGAAATGGATGATAGACATGTTGGCAAAGAATTTCTTGAGGATGAAACTAGTCCAACAGTGAAAATTCCTTCGATTCTCTTCCAGAAAAGACAGCCCAAGCCACCTTGTGAGCAAGTAGAAGCAAGCACCACCACTTTTGGGAGCTCTGCTGCTGGCGACAAAAGAACTTTAGTTGATTCGGACAGCTTTGATGACGGCAACCGTTTATATCCACCTGCAACCCTAAATCACATTCACTCACCAGAGTTTGGGGATTCAACCCAAGCTGCACTTGGCTTTGTGGATCAGTACTTGTCGTCAAATGATGTGGACTTGTTTCAAGGAGTTCATCGTGGAAAGACCGCTAGGGAGAAATCACCTCATGTCCTGAATGCAAGAGGACCACTAAATCTTGCTAAGAAAATTAAAGCCCGAACTAAAAATGAAGAGAAAGAACCGTTCAAATTGGTTGACAGTTGCCAACATGACAACAGAGGTCGTATGTTTAGTCAAAAAAGTGAAGCATCTTCAAATTTTGGAAGATACAAACAGACATATACGAGAACGAAAAAGGGTGGCCATCTTAACTGTAGTACAAGTAATACATTTGATGGGAAGTTAGGCCAAGGACCAAGAATGGCAATTGAAAATGATAACTCTCTCAAGGAATTTAATGTTCATCCAAGTTCTATAAGAGAGAATGCTGATGTTTATTCCGGTGAAACGCATATAGAGGATATGTCTGATATTGGTTTAGGCACTCAAATAGCTGCTGAAGCAATGAATGCCTTAGCTTTAATGCCCCCTTATGGCTGCCAGTTCAATGATACCCATCAACCAGAGAATGCATTAGATGGCTCTTTGAGCGATTTGACAGAGAATGAAGCTCATCTGAATAATTCTTCAAATATTCAGAATCCTAGTTTACGTTCTATTACAACAAAATCAAATAAGAAAAATGCATCCTCCTCTAGATTTAGTAAAATAACATACAGCTCTTCTTGCAAGGACACTGACAAACAGGAGTCAAATGTTGTCTCTGACAAAATGAAAAAAAGGATGAAAGGCAAGTCAACTGCTGAGGGGCGGTTTGAAAATAATAATAGTTTGCCGGTATGCAGTAAACATGTATTGCTTGAAGAGGTTTGCCCACCGGGAGAATACACAAGTTTCGAACCTGCTGCTGAAGAATCCGAACATAGGAACAATGAGAGTGGACATCAAAGAATCAAAGATCAACCAAGCCTTCGTACTGAGGAGAACAATAATGACAAGGAGAAGGGTATTAAACACAAGAGAAAGGAGACTGGTTTAGAGGCTGATCCAGTGAAGTTGGGGGCTAGGACTAAGCGTCTTAAATTCCTTACCGACTCATGTATACTTTCTAAGAAAGTCAGGTTGAATCATCTTACTGAAGTTAGCCCAGAGTTATCTGCAACCCGCAGTTTTTCATGGACTGATTCTTGGGTTTATCCAAAAAGATCACGAGGGAAGAGAAAGGGGGCTAATATGGGAACCAAGCTCAATGCAACAACTGTTTTGTGTACTGATGGAAAAGAAAACAATGTGTTCTCCACTAGAAGTATAGAGGACCAGGCCAATGCTTCATGTGTTGATGATGGCGGATGCTTGTTACAGGGGGACTTTGTGCCACCAGGCTCATCTGGTGATGCAATGAAGGTACAAAACTGGCCTGATATGCACCCTTTATTTTTGGCACATGTTGAAAGAGCATCAAACAGAAGTGTTGCACAATCAAGATCAGGATTTCGTGCTACAGTTGTGGCAAGTGAAGGCGTAAAAGTTTCAAATGTAAACCATTCATACACTGAGCATCACAAAAAGCTGTGCGTAAAAACCCTGCCTAAGTCTTCACTTTTGAAAGAGCTTATCAGATTAGGAGTTCCTGAGTCCATGTCAGATATGATGTGGAAAGATCTGAGGCATCGAAGAGATATGACAGATGTTCGAGTTCTGTTTAGTCAGCATTTGGATGACAGTATCATTAAGCAGCAAAAAAAGATATTGAAGCGTCTCAATATATCTGTTGCATCGTGTTCAATGGAGGCCACACATTTCGTAGCTGACAAATTTACACGCACAAAGAATATGTTGGAAGCCATGGCTCTTGGGAAATTAGTTGTGAATCACTTATGGCTTGAGAGCTGTGGACAAGCCAACTGTTTTATTGACGAGAAAAATTACATTCTGCGGGATATGAAAAAGGAAAAGGAAATAGGCTTCAACATGGCAGTTTCTCTTGCTCGCGCAAGACAAGAGCCACTCCTAAAGGGTAAAAGAGTCTACATCACGCCACATATTAAACCTGATAAGGAAGTGATTGCAAGCTTGGTCACAGCTGTTCATGGCCAGGTAGTAGATCAAAGCGAGGTGTGTGCTGATATGAATGATAAGATCTTAGATGATCTGTTAATTCTTTCTTGTGAAGACGACTATGCAATATGCCATCGTTTATTTAAGAGAGGAACTGCAGTTTACAGTTCAGAGCTTGTTCTGCATGGAATTGTAATCCAAAAATTGGAACTTGAGAGACATCAACTCTTCATGAGTCAAGTTACAAGGAGTAGCAATTGTCCAAGTACGTCTAATCGGTTTGGGAAGGTTTACAGAAGGCGTCGAGGCCTTATCCTGGATTGTAGCTGA 2904 0.4139 MARGSSPHSLTSSPPAGYKVKYASDDDPSRETDLFQDTLVLNSPFTETEYENLNLDTEILEDSEPAEDMTTGKMCEYGQVVLDSEDEEMDDRHVGKEFLEDETSPTVKIPSILFQKRQPKPPCEQVEASTTTFGSSAAGDKRTLVDSDSFDDGNRLYPPATLNHIHSPEFGDSTQAALGFVDQYLSSNDVDLFQGVHRGKTAREKSPHVLNARGPLNLAKKIKARTKNEEKEPFKLVDSCQHDNRGRMFSQKSEASSNFGRYKQTYTRTKKGGHLNCSTSNTFDGKLGQGPRMAIENDNSLKEFNVHPSSIRENADVYSGETHIEDMSDIGLGTQIAAEAMNALALMPPYGCQFNDTHQPENALDGSLSDLTENEAHLNNSSNIQNPSLRSITTKSNKKNASSSRFSKITYSSSCKDTDKQESNVVSDKMKKRMKGKSTAEGRFENNNSLPVCSKHVLLEEVCPPGEYTSFEPAAEESEHRNNESGHQRIKDQPSLRTEENNNDKEKGIKHKRKETGLEADPVKLGARTKRLKFLTDSCILSKKVRLNHLTEVSPELSATRSFSWTDSWVYPKRSRGKRKGANMGTKLNATTVLCTDGKENNVFSTRSIEDQANASCVDDGGCLLQGDFVPPGSSGDAMKVQNWPDMHPLFLAHVERASNRSVAQSRSGFRATVVASEGVKVSNVNHSYTEHHKKLCVKTLPKSSLLKELIRLGVPESMSDMMWKDLRHRRDMTDVRVLFSQHLDDSIIKQQKKILKRLNISVASCSMEATHFVADKFTRTKNMLEAMALGKLVVNHLWLESCGQANCFIDEKNYILRDMKKEKEIGFNMAVSLARARQEPLLKGKRVYITPHIKPDKEVIASLVTAVHGQVVDQSEVCADMNDKILDDLLILSCEDDYAICHRLFKRGTAVYSSELVLHGIVIQKLELERHQLFMSQVTRSSNCPSTSNRFGKVYRRRRGLILDCS* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2090 967 MobiDBLite consensus disorder prediction 468 517 - -
Pvu1g2090 967 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 11 940 - -
Pvu1g2090 967 SMART BRCT_7 730 807 IPR001357 -
Pvu1g2090 967 CDD BRCT_MDC1_rpt1 736 810 - -
Pvu1g2090 967 SUPERFAMILY BRCT domain 725 832 IPR036420 -
Pvu1g2090 967 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 11 940 - -
Pvu1g2090 967 MobiDBLite consensus disorder prediction 378 446 - -
Pvu1g2090 967 Gene3D BRCT domain 724 840 IPR036420 -
Pvu1g2090 967 MobiDBLite consensus disorder prediction 378 420 - -
Pvu1g2090 967 ProSiteProfiles BRCT domain profile. 728 817 IPR001357 -
Pvu1g2090 967 CDD BRCT_PAXIP1_rpt6_like 842 928 - -
Pvu1g2090 967 MobiDBLite consensus disorder prediction 1 31 - -
Pvu1g2090 967 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 730 817 IPR001357 -
Pvu1g2090 967 MobiDBLite consensus disorder prediction 421 440 - -
Pvu1g2090 967 Gene3D BRCT domain 841 942 IPR036420 -
Pvu1g2090 967 MobiDBLite consensus disorder prediction 473 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2090 Pvu-Chr1 46720902 46726043 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2090 K14972 - gmx:102659913 1422.53