Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2072 ATGCGAAGAGCCAGAAATATGAGACCAAACATCGTTTCTGAGGCAGGGTTGCCTACTAGGATGAATCAATGGTGGGAAAGCATTCCATTTCTCACTTCTGCAGTGGTGGTTGTCTGTGGAGTCATTTACTTGGTTTGTCTTTTGGTTGGATACGATTCCTTTGCCGAGGTTTGCTTCTTGCCATCTGCTGTTGTGTCACGGTTTCAAGTTTACAGAATTTATACTTCCATTCTTTTCCATGGTTCACTGCTTCATGTTCTCTTCAACATGATGGCTTTAGTTCCCTTGGGGTCTGAGCTGGAGAGGATCATGGGCTCAGTTCGCTTGCTATATGTCATTATTTTGTTGGCTACAAGCAATGCCATATTCCATGTTCTCATAGCACTGCTGGGGGCACACAATCCTGTTCTTACAGATGATTACCTTATGAATGAGTGTGCAATAGGCTTCTCAGGAGTTCTATTTTCAATGATTGTTATAGAGACAAGCTTGAGTGGAGTTCAATCCAGGAGTGTTTTTGGATTGTTTAATGTGCCTGCCAAGTGGTATGCATTCTTTTTGTTGGTAGTATTCCAGCTTCTCATGCAAAATGTTTCACTACTTGGACATCTTTGTGGCATTTTATCTGGGTTTGCATATACATATGGATTATTTAATTTCCTCATACCTGGAACCACTTTTTATTCTTCTATTGAATCATCCTCTTGGCTTTCATCATGTGTGAGACGACCAAAATTTATTGTTTGCACTGGTGGAAATCCTTCGGGTTATATTCCTACACATACAAGCCAAAACTCAACAAGTGGATTACTTTCTGGAAATATTTGGAGGAACCTATCTTCATTGATGCCTCAAAGGGAAGTGTCTACTCAGTCAACTGAGGACAGTAGGTTCCCTGGGAGGGGAAGGGCCCTTGGTTCTGGTCAAGGTCAGACTGCTTCTCGTCTTCAATCAGATTCAAATCTTCAAGAAAGACTTTTGGAGGATAGTAGTCCCAATAGTACTTTAGTTTCATCCACTCCTAGTAACACTCATCAATTATCAGAAGGAAGGCATTCAGCTGATAGTGTAGCTACAGCGACTGGTGTTCCACCTCATCAGGGTGCAGTTGTTTCGGAAGAAGGGATTACTAAACTTGCATCAATGGGATTTGATAGGACGCAAGTGGAAGTGGCGCTTGCAGCTGCTGATGGTAATCTCAATGTTGCAGTGGAAATACTCATGAGCCAGCAGAGTTAA 1239 0.4213 MRRARNMRPNIVSEAGLPTRMNQWWESIPFLTSAVVVVCGVIYLVCLLVGYDSFAEVCFLPSAVVSRFQVYRIYTSILFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVIILLATSNAIFHVLIALLGAHNPVLTDDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTTFYSSIESSSWLSSCVRRPKFIVCTGGNPSGYIPTHTSQNSTSGLLSGNIWRNLSSLMPQREVSTQSTEDSRFPGRGRALGSGQGQTASRLQSDSNLQERLLEDSSPNSTLVSSTPSNTHQLSEGRHSADSVATATGVPPHQGAVVSEEGITKLASMGFDRTQVEVALAAADGNLNVAVEILMSQQS* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2072 412 Gene3D - 22 219 IPR035952 -
Pvu1g2072 412 PANTHER DER1-LIKE PROTEIN, DERLIN 10 411 - -
Pvu1g2072 412 SUPERFAMILY Rhomboid-like 26 220 IPR035952 -
Pvu1g2072 412 Pfam Rhomboid family 66 219 IPR022764 GO:0004252|GO:0016021
Pvu1g2072 412 Gene3D - 344 412 - -
Pvu1g2072 412 CDD UBA_At3g58460_like 373 408 - -
Pvu1g2072 412 PANTHER RHOMBOID-LIKE PROTEIN 15 10 411 - -
Pvu1g2072 412 SMART uba_6 372 409 IPR015940 -
Pvu1g2072 412 MobiDBLite consensus disorder prediction 284 367 - -
Pvu1g2072 412 SMART DUF1751_2 61 163 - -
Pvu1g2072 412 MobiDBLite consensus disorder prediction 307 355 - -
Pvu1g2072 412 Pfam UBA/TS-N domain 373 407 IPR015940 -
Pvu1g2072 412 SUPERFAMILY UBA-like 365 411 IPR009060 GO:0005515
Pvu1g2072 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 370 410 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2072 Pvu-Chr1 46542787 46556247 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2072 - - gmx:100805745 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2072 1 46542787 46556247 Pvu1g2072 1 46542787 46556247 ECH