Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2059 ATGAGCTACAGCAGTGGTAGCAACTTAATTCTGAAAACGCTGAGGCTGAAGAATCCGAAACTTGTGCTGTTGGAGCGTTGTTGCAATGTTGGGGACCTGAAAATCGTCCATGCCCATTTCTTAAGAACACATCTTTTCTTCGACGTCTTTGTAGCCAGTCGCCTCGTTGCTTTCTGCATAGAATCAACTACCAACTTGCTTCATTACGCCTTAAGGGTCGTCTCCCAAATAAAAAATCCCAACCTTTTCATCTACAATGCACTCATCCGAGGCTGTTCCACCAGCCAAAACCCACAAAATTCTTTTCACTATTACATCAAAGCTCTACGCTTTGGTGTCGTACCTGATAATATCACTCACCCTTTTTTGGTTAAAGCGTGTACCCAGCTTGAGTCTGCACCTATGGGCATGCAAGCACATGGTCAAATTATTAAGCATGGATTTGAACTTGATTTTTTCGCTCGAAACTCCCTTCTTCATATGTATGCAACTGTTGGGGACATAAAAGCTGCAAGGAGCATTTTTCAGAGGATTGGTCGGTTTGACGTAGTTTCATGGACTAGCATGATTGGAGGGTATCATCGATGTGGAGATGTTGAATCTGCACGTCAACTATTTGATAGAATGCCCGAGAGGAATTTAGTGACGTGGAGCACGATGATTAGTGGTTATGCTCGGAACAATTATTTTGACAAAGCGGTTGAGATGTTTGGGGCTCTTCAGGCAGAAGGGGTGGTGGCTAATGAGACTGTTATGGTGGGTGTTATATCTTCTTGTGCTCATTTGGGGGCTCTTGCAATGGGGGAGAAAGCTCATGACTATGTGATGAGAAATAACTTACGTTTGAATCTGATTCTTGGGACAGCCGTGGTTGATATGTATGCAAGATGTGGGGACCTTGGGAAAGCTGTTCAGGTTTTTGAGCTACTGCCGGAAAAGGATGTGCTTTGTTGGACAGCTTTGATTGCTGGACTGGCCATGCATGGTTATGCAGAGAAAGTACTCTGGTATTTTTCAGAAATGCTGAAAACGGGGGTAGTTCCAAGGGACATTACGTTTACTGCAGTGTTGTCAGCTTGCAGCCATGCAGGAATGGTTGAAAGGGGTTTGGAAATATTTGAAAGCATGAAAGAAGATCATGGAGTGGAGCCAAGATTGGAGCACTATGGATGTATGGTTGATCTTCTTGGTCGAGCAGGGAAGTTGGGAGAGGCAGAGAAGTTTGTTCTTGAAATGCCTGTGAAGCCAAATGCTCCAATATGGAGAGCACTGCTAGGAGCATGCAGAATTCACAAGAATGTACAAGTTGGGGAAAGGGTGGGGAAAATTTTGTTAGAGATGCAACCAGAACATAGTGGTCATTATGTGCTACTCTCGAACATATACGCTCGCGCAAATAAGTGGAAAGATGTTACTATTATGAGGCAGATGATGAAGGAGAAAGGAGTAAGAAAGAGACCTGGATACAGTCTCATTGAGGTAGATGGAAAGATTCACGAATTTACAGTTGGAGATAAAACACACCCGGAAATAGAGAAAATAGAAAGAATGTGGGAAGATATAATACTGAAAAAAATACAACTAGTTGGGTATGTTGGAAATACAGGTGAGACATTGTTTGACATTGATGAAGAGGAAAAGGAAGGTGCACTTCACAGGCATAGTGAGAAGCTGGCCATTGCATATGGAATTATGAAGATTCGAGCTCCTACACCCATTAGGGTTGTTAAAAACTTGCGTGTCTGTGAAGATTGTCACACAGCTACCAAGTTGATTTCGAAGGTTTTCCAAGTAGAGTTGATAGTGAGAGATCGAAACCGATTCCATCATTTTAAAGAAGGCACGTGTTCTTGTAAGGATTACTGGTGA 1869 0.4286 MSYSSGSNLILKTLRLKNPKLVLLERCCNVGDLKIVHAHFLRTHLFFDVFVASRLVAFCIESTTNLLHYALRVVSQIKNPNLFIYNALIRGCSTSQNPQNSFHYYIKALRFGVVPDNITHPFLVKACTQLESAPMGMQAHGQIIKHGFELDFFARNSLLHMYATVGDIKAARSIFQRIGRFDVVSWTSMIGGYHRCGDVESARQLFDRMPERNLVTWSTMISGYARNNYFDKAVEMFGALQAEGVVANETVMVGVISSCAHLGALAMGEKAHDYVMRNNLRLNLILGTAVVDMYARCGDLGKAVQVFELLPEKDVLCWTALIAGLAMHGYAEKVLWYFSEMLKTGVVPRDITFTAVLSACSHAGMVERGLEIFESMKEDHGVEPRLEHYGCMVDLLGRAGKLGEAEKFVLEMPVKPNAPIWRALLGACRIHKNVQVGERVGKILLEMQPEHSGHYVLLSNIYARANKWKDVTIMRQMMKEKGVRKRPGYSLIEVDGKIHEFTVGDKTHPEIEKIERMWEDIILKKIQLVGYVGNTGETLFDIDEEEKEGALHRHSEKLAIAYGIMKIRAPTPIRVVKNLRVCEDCHTATKLISKVFQVELIVRDRNRFHHFKEGTCSCKDYW* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2059 622 Pfam E motif 431 493 IPR046848 -
Pvu1g2059 622 Gene3D Tetratricopeptide repeat domain 20 180 IPR011990 GO:0005515
Pvu1g2059 622 Gene3D Tetratricopeptide repeat domain 288 518 IPR011990 GO:0005515
Pvu1g2059 622 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 84 596 - -
Pvu1g2059 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 384 IPR002885 -
Pvu1g2059 622 TIGRFAM PPR: pentatricopeptide repeat domain 351 384 IPR002885 -
Pvu1g2059 622 TIGRFAM PPR: pentatricopeptide repeat domain 317 348 IPR002885 -
Pvu1g2059 622 TIGRFAM PPR: pentatricopeptide repeat domain 215 248 IPR002885 -
Pvu1g2059 622 TIGRFAM PPR: pentatricopeptide repeat domain 184 214 IPR002885 -
Pvu1g2059 622 Pfam DYW family of nucleic acid deaminases 530 622 IPR032867 GO:0008270
Pvu1g2059 622 Pfam PPR repeat 351 379 IPR002885 -
Pvu1g2059 622 Pfam PPR repeat 317 345 IPR002885 -
Pvu1g2059 622 Pfam PPR repeat 215 245 IPR002885 -
Pvu1g2059 622 Pfam PPR repeat 288 314 IPR002885 -
Pvu1g2059 622 Pfam PPR repeat 184 213 IPR002885 -
Pvu1g2059 622 Pfam PPR repeat 388 413 IPR002885 -
Pvu1g2059 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Pvu1g2059 622 Pfam E+ motif 498 521 IPR046849 -
Pvu1g2059 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Pvu1g2059 622 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 84 596 - -
Pvu1g2059 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Pvu1g2059 622 Gene3D Tetratricopeptide repeat domain 181 279 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2059 Pvu-Chr1 46465766 46467634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2059 26 622 Glycoside Hydrolase AT3G49170 33.040 3.52e-126 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2059 - - gmx:100797063 1134.01