Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2056 ATGGACACTGGACCGTGGAATTCTTCTTCCTCCAAGATCAAGTCCAGATCCCCCTTCCAAGTTCGCCCCTTCCGCACTAAGAATTCTCAAGAAAACCTGGACAGGTTCATTCCCAATCGGTCGGCGATGGATTTCGGCTATGCGCACTACATGCTCACGGAGGGTAACAAGAAGGGCAGGGAGAAAGAGAACGGTGTGGTGACGTCACCATCTCGAGAAGCATACCAGAAGCATCTCGCCGAGGCTTTCAACATGAATCGCACTCGAATCTTGGCCTTCAAGAACAAACCTCCAACGCCGGTTGAACTCATCCCCAAGTGCATCCTTTCGCCTCCTCCCCCATCCAAATCCTCTAAGCCCAGACGTCACATTCCTCAGAGTTCTGAGAGAACGTTGGATGCTCCAGATATACTGGATGACTTTTATTTGAACCTATTGGATTGGGGTAGCGGCAATGTTCTTAGTATTGCCCTTGGGAACACTGTGTATCTATGGAACGCCGATGATAGCTCCACTTCTGAACTTGTCACTGTGGATGAGGAAGATGGTCCTGTTACAAGTGTTGCCTGGGCTCCCGATGGACGCCATTTAGCCATTGGTTTGAACAATTTTCATGTCCAGCTCTGGGATTCTCATTCTTCTAGGATGGTAAGAACATTAAGAGGTGGACATCAAGCACGAGTAGGTTCACTGTGTTGGAACAATCATATCCTCACAACAGGAGGGATGGATGGTAGAATCGTTAACAACGATGTTAGAGTGAGGTCTCATATTGTTGAATCTTATAGAGGACATCAGCAGGAGGTTTGTGGGCTTAAGTGGTCTCCCTCAGGACAACAATTGGCGAGCGGGGGCAACGATAATGTTATTCACATATGGGACAGGGCTAGTGCCTCTTCAAATTCAGCAACCCGTTGGCTTCACAGATTTGAGGAACATAGAGCTGCTGTGAAGGCACTAGCTTGGTGTCCATTCCAAGCAAATCTGCTTGCTTCAGGTGGAGGTGGGGGCGATCACTGCATCAAGTTCTGGAACGCGCATACAGGGGTGTGCTTGAACTCTGTCAACACAGGCTCACAAGTGTGCTCTCTGCTGTGGAACAAGAATGAGCGTGAGTTGCTTAGCTCTCATGGTTTCACCCAGAACCAGCTTACTCTTTGGAAATATCCTTCAATGCTTAAGATGGGAGAGCTCAAGGGTCATACCTCCAGGGTGTTGTATATGACGCAAAGTCCAGATGGGTGTACTGTGGCTTCTGCAGCAGGGGACGAGACTCTGAGATTTTGGAATGTTTTTGGAACTCCACAAGCTTCCAAACCAGCGCCAAAAGCCAATACTATTACTGAGCCCTTTGCTCATGTGAATCGTATTCGCTGA 1377 0.4851 MDTGPWNSSSSKIKSRSPFQVRPFRTKNSQENLDRFIPNRSAMDFGYAHYMLTEGNKKGREKENGVVTSPSREAYQKHLAEAFNMNRTRILAFKNKPPTPVELIPKCILSPPPPSKSSKPRRHIPQSSERTLDAPDILDDFYLNLLDWGSGNVLSIALGNTVYLWNADDSSTSELVTVDEEDGPVTSVAWAPDGRHLAIGLNNFHVQLWDSHSSRMVRTLRGGHQARVGSLCWNNHILTTGGMDGRIVNNDVRVRSHIVESYRGHQQEVCGLKWSPSGQQLASGGNDNVIHIWDRASASSNSATRWLHRFEEHRAAVKALAWCPFQANLLASGGGGGDHCIKFWNAHTGVCLNSVNTGSQVCSLLWNKNERELLSSHGFTQNQLTLWKYPSMLKMGELKGHTSRVLYMTQSPDGCTVASAAGDETLRFWNVFGTPQASKPAPKANTITEPFAHVNRIR* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2056 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 303 IPR001680 GO:0005515
Pvu1g2056 458 MobiDBLite consensus disorder prediction 107 130 - -
Pvu1g2056 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 431 IPR001680 GO:0005515
Pvu1g2056 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 431 - -
Pvu1g2056 458 SUPERFAMILY WD40 repeat-like 139 431 IPR036322 GO:0005515
Pvu1g2056 458 CDD WD40 160 430 - -
Pvu1g2056 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Pvu1g2056 458 SMART WD40_4 303 345 IPR001680 GO:0005515
Pvu1g2056 458 SMART WD40_4 171 210 IPR001680 GO:0005515
Pvu1g2056 458 SMART WD40_4 213 251 IPR001680 GO:0005515
Pvu1g2056 458 SMART WD40_4 391 430 IPR001680 GO:0005515
Pvu1g2056 458 SMART WD40_4 255 294 IPR001680 GO:0005515
Pvu1g2056 458 SMART WD40_4 348 388 IPR001680 GO:0005515
Pvu1g2056 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 219 IPR001680 GO:0005515
Pvu1g2056 458 PANTHER CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE 1 456 - -
Pvu1g2056 458 Pfam Anaphase-promoting complex subunit 4 WD40 domain 177 235 IPR024977 -
Pvu1g2056 458 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 1 456 IPR033010 GO:0010997|GO:0097027|GO:1904668
Pvu1g2056 458 ProSitePatterns Trp-Asp (WD) repeats signature. 417 431 IPR019775 -
Pvu1g2056 458 Gene3D - 86 433 IPR015943 GO:0005515
Pvu1g2056 458 Pfam WD domain, G-beta repeat 260 294 IPR001680 GO:0005515
Pvu1g2056 458 Pfam WD domain, G-beta repeat 395 430 IPR001680 GO:0005515
Pvu1g2056 458 Pfam WD domain, G-beta repeat 307 345 IPR001680 GO:0005515
Pvu1g2056 458 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2056 Pvu-Chr1 46431755 46433980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2056 204 431 Miscellaneous Gene Families AT5G08390 21.397 6.03e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2056 K03363 - gmx:100801495 819.69