Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2052 ATGGATTCCCCTTCCATCTATGGCGTCACCCACATCTTCACCCTCTTCATCGTCTTCCTTCTACCATTCCCTTCCCTCTCCGCATTCCCTCACAACTCTTCAACCACCCCTCAGGTTAACTCCAACTCCATCCTCGTTGCGCTTCTCGATTCCCATTACACCGAACTAGCCGAGCTCGTCGACAAAGCACTTCTTCTCCAGCAACTTGAAGATGCCGTCGGCAACCACAACATCACCGTCTTCGCGCCGCGAAACCAGGCCCTCGAACGCGACCTCGACCCCGAGTTCAAGCGCTTCCTCCTTGAGCCCCGCAATCTCCGCTCCCTTCAGACGCTCCTCATGTCCCACATTCTCCCCACGCGAATCTCCTCTCGCCACTGGCCCGCCGCCGACCGCCGCCACGCCACGCTCGGAAACCACCACCACTTGCATTTGGCCACCAAGCCCTCCGGTCAGATGACTGTCGACGCCGCCGAGATCCTCCGCGCTGACGACATCGTCCGTCCCGACGGCGTCATCCACGGCATTGAGCGTCTCCTAGTTCCCCGATCCGTCCAGGAGGACTTCAACCGCCGCGCGCCGGAAATCGATCCCCGCACCCACCGCCTCAAGAAGTCCGCCCCCGTCCCCGCCGGCGCCCCACCCGTGCTTCCAATCTACGACGCCATGGCGCCGGGACCGTCCATCGCGCCAGCACCTGCTCCAGGACCCGGAGGTGCGAAGCACCACTATAACGGCGAGCGGCAGGTGAAGGACTTCATCCACACGCTCTTGCATTACGGAGGGTACAACGAAATGGCCGATATTCTCGTTAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTCGTTTCGGAGGGTTATGTTCTGACCGTTTTGGCCCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCTGGCGCGCCGGAGCAGATTATGTACTATCACATTATTCCCGAGTACCAAACCGAAGAGAGTATGTACAATGCCGTTAGAAGGTTCGGTAAGGTCAGTTACGATACGCTGCGCTTACCCCATAAGGTTCTCGCTCAGGAGTCTGACGGTTCCGTTAAATTCGGGCACGGCGATTCCTCCGCTTACTTGTTCGATCCTGATATTCACACCGATGGAAGGATCTCCGTCCAGGGAATTGACGGCGTTCTTTTCCCCCCGGAGGAATTGGAAGAACGCACCCGCCGCACCACTCCACTTGTCAAGGTTGCCGCTAAACCAAGGAGAGGGAAGTTAATGGAAGTGGCCTGTAGCATGCTTGGAGCTTTTGGACAAGTCTGCCAATGA 1314 0.5799 MDSPSIYGVTHIFTLFIVFLLPFPSLSAFPHNSSTTPQVNSNSILVALLDSHYTELAELVDKALLLQQLEDAVGNHNITVFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRISSRHWPAADRRHATLGNHHHLHLATKPSGQMTVDAAEILRADDIVRPDGVIHGIERLLVPRSVQEDFNRRAPEIDPRTHRLKKSAPVPAGAPPVLPIYDAMAPGPSIAPAPAPGPGGAKHHYNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIHTDGRISVQGIDGVLFPPEELEERTRRTTPLVKVAAKPRRGKLMEVACSMLGAFGQVCQ* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2052 437 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 435 IPR044654 -
Pvu1g2052 437 SMART fasc_3 79 183 IPR000782 -
Pvu1g2052 437 SMART fasc_3 291 396 IPR000782 -
Pvu1g2052 437 ProSiteProfiles FAS1/BIgH3 domain profile. 40 180 IPR000782 -
Pvu1g2052 437 ProSiteProfiles FAS1/BIgH3 domain profile. 250 393 IPR000782 -
Pvu1g2052 437 SUPERFAMILY FAS1 domain 31 183 IPR036378 -
Pvu1g2052 437 SUPERFAMILY FAS1 domain 229 397 IPR036378 -
Pvu1g2052 437 Pfam Fasciclin domain 285 395 IPR000782 -
Pvu1g2052 437 Pfam Fasciclin domain 52 182 IPR000782 -
Pvu1g2052 437 Gene3D FAS1 domain 269 396 IPR036378 -
Pvu1g2052 437 Gene3D FAS1 domain 44 183 IPR036378 -
Pvu1g2052 437 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 1 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2052 Pvu-Chr1 46394798 46397054 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2052 - - gmx:100818575 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2052 1 46394798 46397054 Pvu1g2052 1 46394798 46397054 ECH