Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2044 ATGACCCGTTTTTCCGAGAGGCTCCGTTTGCGCTGGTTGTTTCCGAAACCGACCCGTTTTCTCGCTCTTGTTTCTCTCTCCACTCTCCATCATCTCTGCAAGTCTCTCGTTCGCTTCCTACTCTACCAAACCCTACCTTTCCTCGCTATGGACAACTTCTTCTCCGACTACCTTTCCGACGACTTCGATTCCTCCCCTTACCGTTCCCACCGCCGCTTCCTCCACGACCACGACCACGATTTCGCCCACGAGAGGGTCTACCTCCTCCCCTACAGGTGGTTGGTGGAAGCGGAAGGTGAAGCTGATCGGAGAGAGGGTGTGCTTTATACGGTGAGTTGTAATTCCGATTCCGACTCCGAGATTTTGCTTCATCTGAGGAAGGAGGAGGAGCGTCACAAGATTGGGGTTTCTAGTCGTCAGTATGCGTTGGTTCCCGAGGGAGTTTGGTTGCGAACACTCAAACGGTATAATGATTTTAATAATGCAGCGAAAGATGTTGGAAGCCTCTCCAATGCAGAGGATTGTTTGCCTGAATTGTTCCCCTTGCAAATTAAGATATTTGTTTCATGGGAAACCAGTTCACTGGTGGCAAAAATAAGCCAAAAGGAAAATGTGGCTGACTTCTATGAGAAAGCATGTGACATTTTCAATTCTGCATATATCCCCGTGCATATTTGGGACTTTTCAGGGCAGACGACACAGTTTTTTGTGAATGACAAATCAAGATTGCCAAATGATTCTTCTGGTCAATCTGTAAAAGAGGTTGCTTTGGAGTTACAAGTACATGGACTTCCAGATTCTATGGGGGGCAATGGGATGATTTTCGATAAGTCTCAGATAGAATGTTCACGCAGTGGTTCTGTTTCAATGAATGGAAGCACTGACAATGTGCCCCCCTGCATAACAGCCAACTGTTTTCGAGGTAGTAGTTGTAGAGCAATTCGATCTTTGGGCTTGACAGGATTACAAAATCTTGGAAATACATGTTTTATGAATAGTGCTATTCAATGTCTGGCTCACACCCCAAAGCTCGTTGATTTTTTCCTTGGAGATTATCATAAAGAGATTAATTATGAAAATCCGTTGGGAATGAATGGAGAACTAGCCCTAGCTTTTGGAGACTTGCTTAGAAAGCTGTGGGTTCCTAGAGCTATGCCCATTGCACCAAGAACGTTCAAGATGAAACTGGCTAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAGCATGACTCTCAAGAACTTCTTGCTTTTTTGTTGGATGGATTGCATGAAGACCTTAATCGAGTGAAACGCAAGCCATATCATGAAGTCAAGGATGCAGACGGTCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCATAGTAGTTGATTTGTGCCAAGGTCAGTTTCGGTCAACACTAGTTTGCCCTATTTGCAAGAAGGTTTCTATCACATTTGACCCTTTTATGTATCTATCTCTGCCTTTACCTTCTACAACGATACGGACCATGACTTTGACGGTCATAAGCACCGACGGGATTACATTGCCTTCTACAATTACAGTAACAGTACCTAACTGTGGAACAGTGAATGATCTTATTGGGGCTTTAAGTACTTCTTGTTCTCTGAGAGAAGATGAAACCCTCTTGGTGGCTGAGATATACAGGAATAAAATTATTCGAACATTCGAGAATCTTTCTGATTCATTAGGTGATATTAGAGATCAAGATAAAGTTGTTGCATACCGAATGCAGAAGGATACTGAAGCAACTCCCTTGGCTGTTTTTGTCCATGAACGTTCGGTGGAAAATTCTGGGAAGGAAAGGTTTGACAGCAGGTTGTTTGGTATTCCCCTTGTTACAAGGTTGTCCAATATTTCTTGTGGATATGATATTCAAAGGGAGTTTCTGAAGTTAATCCATCCATTTTTGATGCGCACTAAAGATGTATCGGATGATTATGAAAATAATGATGGTATTAGTGAAAGACCAATTGAAGATGATGAATTGGGGGATACTACTTCCGCAATAGGAAATGATGCTGACTCAATCATTGGAACAGATGATGGCATACATTTGTCGACTGACTTTGAATTCTACTTACATGGAATGGAGAATGTCAAGATAATATTGGACGAACCGTTGACAGTCACAACATTTTCCAGAAAGGGGCCTGAGGTAGTTGTCTTGTGGTCGGATAAGATGCTTAAAATGTATAATACATCTTTGCTTGACTCACTGCCCGAGGTTTTCAAGTCCCAGCTATTCGCCAAGAGAATACAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCCTTCTTGAAAGAGGAACCTCTTGGACCAGAAGACATGTGGTACTGTCCTACCTGCAAAAAACCTCAGCAGGCAACTAAAAAACTAGATCTTTGGAGATTGCCGGAGATTCTTGTTGTTCATTTGAAGAGGTTCTCATACAGCCGATACTTAAAGAACAAGCTGGAAACATTTGTTGATTTCCCAATTAATAATCTGGACTTATCAACATATGTAGCATATGGGAATAGTCAATCTACCAACCGCTATGTGTTGTATGCTATTAGTTGTCATTATGGAGGGTTAGGAGGAGGCCACTATACAGCATTTGTCCGATATGGCTATGATAAATGGTATGATTTTGATGACAGCAGAGTCGAATCTGTTAACGAGGAGATGATAAAGACTCCTGCTGCTTATGTTCTTTTCTACAGGAAAGTTTAG 2742 0.423 MTRFSERLRLRWLFPKPTRFLALVSLSTLHHLCKSLVRFLLYQTLPFLAMDNFFSDYLSDDFDSSPYRSHRRFLHDHDHDFAHERVYLLPYRWLVEAEGEADRREGVLYTVSCNSDSDSEILLHLRKEEERHKIGVSSRQYALVPEGVWLRTLKRYNDFNNAAKDVGSLSNAEDCLPELFPLQIKIFVSWETSSLVAKISQKENVADFYEKACDIFNSAYIPVHIWDFSGQTTQFFVNDKSRLPNDSSGQSVKEVALELQVHGLPDSMGGNGMIFDKSQIECSRSGSVSMNGSTDNVPPCITANCFRGSSCRAIRSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYHKEINYENPLGMNGELALAFGDLLRKLWVPRAMPIAPRTFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVISTDGITLPSTITVTVPNCGTVNDLIGALSTSCSLREDETLLVAEIYRNKIIRTFENLSDSLGDIRDQDKVVAYRMQKDTEATPLAVFVHERSVENSGKERFDSRLFGIPLVTRLSNISCGYDIQREFLKLIHPFLMRTKDVSDDYENNDGISERPIEDDELGDTTSAIGNDADSIIGTDDGIHLSTDFEFYLHGMENVKIILDEPLTVTTFSRKGPEVVVLWSDKMLKMYNTSLLDSLPEVFKSQLFAKRIQESVSIYKCLEAFLKEEPLGPEDMWYCPTCKKPQQATKKLDLWRLPEILVVHLKRFSYSRYLKNKLETFVDFPINNLDLSTYVAYGNSQSTNRYVLYAISCHYGGLGGGHYTAFVRYGYDKWYDFDDSRVESVNEEMIKTPAAYVLFYRKV* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2044 913 CDD Peptidase_C19R 760 911 - -
Pvu1g2044 913 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 321 336 IPR018200 GO:0004843|GO:0006511
Pvu1g2044 913 Gene3D Cysteine proteinases 308 548 - -
Pvu1g2044 913 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 856 873 IPR018200 GO:0004843|GO:0006511
Pvu1g2044 913 Pfam Ubiquitin carboxyl-terminal hydrolase 320 910 IPR001394 GO:0004843|GO:0016579
Pvu1g2044 913 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 320 913 IPR028889 -
Pvu1g2044 913 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 49 913 - -
Pvu1g2044 913 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 49 913 - -
Pvu1g2044 913 SUPERFAMILY Cysteine proteinases 318 912 IPR038765 -
Pvu1g2044 913 Gene3D Cysteine proteinases 564 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2044 Pvu-Chr1 46343741 46351220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2044 767 913 Miscellaneous Gene Families AT4G31670 36.000 4.58e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2044 - K21343 gmx:100791802 1508.43