LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g2034	ATGGCGACGATAGATCCGTTGATGACGCCGCTGGGGCAAATGCTATTGGAGGAGATCACTCCGGTGGTGATGCTTATTTCAACTCCTTCTGTCGAAGAAGCTTCTCTCAAGAACGGCCTCTCCTTCCTCCAGACGCTAACGCCGTTCTGCTCTTTCGACAACATCGACGTGCCTGTTAGGACTGCCAGTGACCAACCCTATCGTCTTCACAAGTTCAAATTACGCTTGTTCTACGCCTCCGATGTGAAGAGGCCCGATTTGAAGGTAGCTAAAGAGCAATTGAAGCAAGTTATCACGGAGGCAGGGGAGAAAGAGTTTCCTGACTCGAGTTCTGATTTGCCGGAAATTAATCTTGAACTTTCCTCGAGTTCTGAATACCAAAATACACCATCTTGGTTTCGGTTTCTCAATAAAGAGCTTGTTCGTGTGGCTTCCTTTTCAGACCATGAAGCTTTTGACCATCCCGTGATATGTCTTCTAGCTGTCTCTTCTAAGGATGAGCAACCTATTAACAGATTTGTTGAATTTTTTAATACCGATAAGCTTCCTTCCCTTTTTAATGATGGTGCAATGGATCCAAAAATTTCAAAGCATTACTTGTTAGTGCATGATAATCAAGATGGTCCTGCAGACAGAGCAAGTAGAATATTGACAGAAATGAGGAGTACTTTTGGTACAAACGATTGTTCGTTGCTTTGTATTAATTCTTCTGTGGATGCTCCATTCAAACATCAAGATAATCCTTGGGCTTCATATATAACTGATTCCTCATCCACTCCCAGTCAAGGTCTTGGTTGCTTTCTTAACATGGGTGATATTGATGAGATTAAAGTTCTAATGCAAGATTTATCATCTAAGCACATCATTCCAAGTATGGAGCAAAAAATTCGTATACTCAACCAACAGGTTTCTGCAACACGGAAAGGGTTTAAAAATCAAATAAAAAATTTATGGTGGAGAAAAGGGAAAGAAGACGGTGCAGATTCTCTCAGTGGTCCTGCGTATAACTTTAATTCCATTGAATCCCAGATTCGAGTTTTGGGTGATTATGCTTTCATGTTACGAGATTATGAACTTGCCTTGTCAAATTATCGCCTAATTTCCACAGATTACAAGATTGATAAAGCCTGGAAGCGCTATGCTGGTGTGCAGGAAATGATGGGACTTACTTACTTCATATTGGATCAATCAAGAAAGGAAGCCGAATATTGCATGGAAAACGCTTTTAACACATATTTAAAGCTTGGATCATTGGGTCAGCTAAATGCAACACGATGTGGTCTGTGGTGGATAGGAATGTTAAAGGCACGTGATCAATATAAGGAGGCAGCTACTGTTTATTTTCGTATTTGTGGTGAGGATATCCTACATTCTGCTGTGATGCTTGAACAAGCATCATACTGCTACTTGTTGTCTAAACCCTCCATGTTACGCAAATATGGATTTCATGTAGTGCTTTCCGGTGAGCAGTATAAAAAGTGTGACCAGATTAAACATGCAATTCGAACCTACCGAAGTGCTCTTTCTGTTTTTAGAGGAACTACTTGGAGTTACATCAATGATCATGTTCATTTCCATATAGGACAGTGGTACGCTTCTCTTGGGATGTATGACGTGGCTGTCAAGCATATGACAGAAATCTTGTCCTGTAGCCACCAGTCCAAGACAACACAGGAATTATTCCTAGGCGACTTTCTTCAAATTGTGGAGAAAACTGGACGGACGTATGAGGTAACAAAGCTTCAATTGCCTGTAATCAACATCTCTACACTCAGGGTCATCTACGAAGATTTCCGGACGTTTGGATCCCCTTCAGCTGCTAACACTAGAGAAAGCTTGTGGCGTTCTTTGGAGGAAGAAATGCTACCATCGTTCTCTGCTGCCAAGACTAATTGGTTGGAGTTGCAATCAAAGCTTATTTTAAAAAAGCACAGTCAAAATGTTTGTGTTGCAGGCGAATCTGTGAAGGTGACTATTGAATTTAAAAATCCTCTTCAAATCTCAATTCCCATATCTAGTGTTACACTCGTATGCAAGTATTCTGCCAGTACTGATCAAGTTATATCAAATGAAATTGAGTCAAGTATGGAGAAAGATAATAAGGTTGACCACTTTAGAAATATGAGCTCTGACAATTCCTCATTTATGGTATCTGAGGTTGATTTCTTACTAGGAGGTGGTGAAACAACCATGATCGAATTATCAGTTACTCCCAAGGAAGAGGGTACTCTTGAAATTATTGGTGTTAGGTGGAAACTGTCGGGAACAATCGTGGGCTTTTACAACTTTGAGTTGGGTCAACCAAAGAAGAATATAAAAGGAAGGAAAACAAAGGACTTGCCAAATGAGAAATTTAAATTTATGGTTATTAAGAGCATACCCAAGCTTCAGGGTTCCGTCCACCCTTTACCTGGAAAGGCATATGCTGGAGATTTACGTCAACTTGTTTTGGAATTGAGGAATCCATCGGAGTTTCCTGTTAAGAATCTGAAGATGAAGATAAGTCATCCTAGGTTCCTTATAATTGGGAAGCAGGAAACTGTGATGTCAGAGTTTCCTGCATGTTTAAGAAAGAAGACAGATTCAGTACAAAGTGATCTGCATGCTAATCCTAATATCACGTCTAACACTGTTTTTTTGTTTCCAGAGGGTACATCAGTTCAAGGTGAAACACCCTTCTTGTGGCCTCTTTGGTTTAGGGCTGCTGTTCCAGGTGATATATCTCTTTGCATGAGCATATATTATGAGATGGGAGATGTATCAAGTATCATCAAGTATCGCACTCTTCGCTTGCATTACAATGTGCAGGTATTACCATCATTGGATGTCTCCTTTCAAATCTGTCCTTTCCGATCAAGCTTAGAAGAATTTCTTGTTCGATTGGATGTTGTTAATAAGACTAGCTCAGAAAGTTTCCAAGTATGTCAGTTGTCATCAGTTGGTCACCAGTGGGAAATCTCATTAGTTCAAGCTCCGGATAGTATTTTTCCTTCACAATCATTGATGGCTAGTCAAGCAATATCATGTTTCTTTACACTAAAGAAATCAAGGAGGCTTCCGACATTTGGGGACAACATGTCCACATTGCCTGTCAGAAGTAATGCAAGATTGGTACCCCAAAGTATTGAAGATATAGTTTATGATATAAACAGTGCACCTTTGGTCAATTTCCATCATTATGAAAGATTGCAGCAGGAAGTTTCATACAAGGGTGACTTAAATACTGTTGATTTTGTATTAATCTCTTGCCCATTCAAGAGTAGCGACGATCCAGGTTTCTCTAATCCTTCGTCTGTAATGTCCCATCACGCGTGCCACTTCAGTACTGCTAGCACGGGCCCTATTTCGTGGCTAGTGGATGGACCTCAAACCATGCATCATGACTTCTCTGCATCGTTCTGTGAAATAAGTATGAAGATGCACATTCACAATTCATCTGGTGCCACCGCTTTTGTACGCATTGACACCTTAGATTCAGCTGGTAATGGTGGACATATGAACAGTGTAAATGTGGTTCAATCTGCAACTACTGATAACCAAGCTGGATGGCACGATATCACCCCAGTGAATGAACTCAAAGTCACATCAAATGCTCTTGAAACCCAACCAGGAAAGGCACTATCATTGGAAAGTGCCTCCTCATATATTTGGTCTGGATCAAGCTCAACCCACCTCCACATTGAGGCTATGTCCTCGGCAGAAATTCCTCTTCAGATCTGTGTATTCTCTCCTGGGACATATGACCTGTCAAATTATGTTTTGAATTGGAAACTTCCATCCAATGGACAGGGAGATAGGGATGAAAAGAAGCAGCATTCAGGCCAGTGCCAAGGGTATAAATACTATCTTACCGTGCTCCAGTCCACTTGA	3870	0.4085	MATIDPLMTPLGQMLLEEITPVVMLISTPSVEEASLKNGLSFLQTLTPFCSFDNIDVPVRTASDQPYRLHKFKLRLFYASDVKRPDLKVAKEQLKQVITEAGEKEFPDSSSDLPEINLELSSSSEYQNTPSWFRFLNKELVRVASFSDHEAFDHPVICLLAVSSKDEQPINRFVEFFNTDKLPSLFNDGAMDPKISKHYLLVHDNQDGPADRASRILTEMRSTFGTNDCSLLCINSSVDAPFKHQDNPWASYITDSSSTPSQGLGCFLNMGDIDEIKVLMQDLSSKHIIPSMEQKIRILNQQVSATRKGFKNQIKNLWWRKGKEDGADSLSGPAYNFNSIESQIRVLGDYAFMLRDYELALSNYRLISTDYKIDKAWKRYAGVQEMMGLTYFILDQSRKEAEYCMENAFNTYLKLGSLGQLNATRCGLWWIGMLKARDQYKEAATVYFRICGEDILHSAVMLEQASYCYLLSKPSMLRKYGFHVVLSGEQYKKCDQIKHAIRTYRSALSVFRGTTWSYINDHVHFHIGQWYASLGMYDVAVKHMTEILSCSHQSKTTQELFLGDFLQIVEKTGRTYEVTKLQLPVINISTLRVIYEDFRTFGSPSAANTRESLWRSLEEEMLPSFSAAKTNWLELQSKLILKKHSQNVCVAGESVKVTIEFKNPLQISIPISSVTLVCKYSASTDQVISNEIESSMEKDNKVDHFRNMSSDNSSFMVSEVDFLLGGGETTMIELSVTPKEEGTLEIIGVRWKLSGTIVGFYNFELGQPKKNIKGRKTKDLPNEKFKFMVIKSIPKLQGSVHPLPGKAYAGDLRQLVLELRNPSEFPVKNLKMKISHPRFLIIGKQETVMSEFPACLRKKTDSVQSDLHANPNITSNTVFLFPEGTSVQGETPFLWPLWFRAAVPGDISLCMSIYYEMGDVSSIIKYRTLRLHYNVQVLPSLDVSFQICPFRSSLEEFLVRLDVVNKTSSESFQVCQLSSVGHQWEISLVQAPDSIFPSQSLMASQAISCFFTLKKSRRLPTFGDNMSTLPVRSNARLVPQSIEDIVYDINSAPLVNFHHYERLQQEVSYKGDLNTVDFVLISCPFKSSDDPGFSNPSSVMSHHACHFSTASTGPISWLVDGPQTMHHDFSASFCEISMKMHIHNSSGATAFVRIDTLDSAGNGGHMNSVNVVQSATTDNQAGWHDITPVNELKVTSNALETQPGKALSLESASSYIWSGSSSTHLHIEAMSSAEIPLQICVFSPGTYDLSNYVLNWKLPSNGQGDRDEKKQHSGQCQGYKYYLTVLQST*	1290

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g2034	1289	Gene3D	Tetratricopeptide repeat domain	330	559	IPR011990	GO:0005515
	Pvu1g2034	1289	Pfam	ER-Golgi trafficking TRAPP I complex 85 kDa subunit	178	524	IPR024420	-
	Pvu1g2034	1289	Pfam	Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit	643	831	IPR013935	-
	Pvu1g2034	1289	SUPERFAMILY	TPR-like	435	556	IPR011990	GO:0005515
	Pvu1g2034	1289	PANTHER	TRANSPORT PROTEIN TRAPP	10	1288	IPR024420	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g2034	K20305		-	gmx:100813062	2304.25

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g2034	1	46249037	46264875	Pvu1g2034	1	46249037	46264875	ECH