Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2016 ATGGAAGACACCAAATCCAGGTTCAAGAGGATTTGCGTCTTCTGTGGCAGCAGTTCAGGCAAAAAACCTACCTATCAAGAAGCTGCTGTTCAACTTGGCAGGGAGCTGGTGGAAAGAAGGATTGATTTGGTGTATGGAGGTGGCAGCGTGGGGCTTATGGGTCTCGTTTCTCAGGCAGTTCATGATGGTGGGCGCCATGTTCTAGGGGTTATCCCAACAAGTCTTATGCCAAGAGAGATAACAGGTGAACCTATTGGGGAAGTGAGAGCCGTATCTAATATGCACCAAAGGAAAGCTGAGATGGCCCGTCAAGCCGATGCCTTTATTGCCCTCCCAGGAGGATATGGAACCCTTGAAGAATTGCTCGAAGTCATTACATGGGCTCAGCTTGGGATCCACAGCAAACCCGTGGGGCTCTTGAATGTGGATGGATTTTACAATTCCTTGTTGTCTTTCATTGACAAGGCCGTTGATGAAGGCTTTATATCCCCTAAGGCACGACGCATTATCGTGTCAGCACCCACAGCCAAACAACTCATGCTAGAACTAGAGGAACATGTCTGTGAGCAAGATGAGTTTGCGTCCAAGTTGGTGTGGGAAGAAAGACTGAATTTCGTTACTGAATCAGAAGTGGCCATGTGA 642 0.4813 MEDTKSRFKRICVFCGSSSGKKPTYQEAAVQLGRELVERRIDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPTSLMPREITGEPIGEVRAVSNMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHSKPVGLLNVDGFYNSLLSFIDKAVDEGFISPKARRIIVSAPTAKQLMLELEEHVCEQDEFASKLVWEERLNFVTESEVAM* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2016 213 TIGRFAM TIGR00730: TIGR00730 family protein 9 184 IPR005269 GO:0009691|GO:0016787
Pvu1g2016 213 Pfam Possible lysine decarboxylase 53 180 IPR031100 -
Pvu1g2016 213 Gene3D - 1 185 - -
Pvu1g2016 213 SUPERFAMILY MCP/YpsA-like 7 180 - -
Pvu1g2016 213 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOG2 2 206 - -
Pvu1g2016 213 PANTHER LOG FAMILY PROTEIN YJL055W 2 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2016 Pvu-Chr1 46037896 46042703 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2016 K22522 - gmx:100792663 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2016 1 46037896 46042703 Pvu1g2016 1 46037896 46042703 ECH
Pvu1g2016 1 46037896 46042703 Pvu7g2774 7 50766672 50770415 PCT