Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1992 ATGACAGGGGCGGAGAATAGTGAGGGGAGCGGGAGTGAATGGGAATTAGCGGGAAATGGCGATAACGGTTTTTTGGAGTCTAGTGGTTCTGCTGGTTGTGAAGGGAACGACAGCGTTTCTTATGCGAACGTCTTGCGTTCGAGGAACAAGTTTGCTGATGCTCTTGCTATCTACGAGCGTGTCTTGGAGAACGACGGTGCAAATGTAGAGGCGCTCATCGGGAAAGGCATATGCCTCCAGATGCAGAATAAGGGAAGGCTCGCGTTTGAGAGTTTTTTTGAGGCTATCAAGCTGGATCCTCAAAATGCGCGTGCTCTCACACATTGCGGCATTTTGTACAAGGACGATGGTCGCCTAATGGAGGCGGCTGAGTCATATCAGAGGGCTTTACGAGTGGATCCTTCATACAGAGCAGCTGCTGAATGCCTTGCCATTGTGTTAACAGATATTGGCACCAACACAAAGCTTGCTGGATTCACTCAGGATGGAATTAAAAAATACTTTGAAGCGCTCAAAGTAGATCCGCACTATGCTCCTGCATACTACAATCTTGGTGTGGTGTATTCAGAAATGATGCAATACGACATGGCCCTCACTTTCTATGAAAAAGCTGCAGCAGAGAGGCCAGTTTATGCTGAGGCATATTGCAATATGGGTGTTATTTTTAAAAATCGCGGTGATTTGGATTCAGCTATTTCTTGTTATGATAGGTGTTTAACTGTTTCACCTAACTTTGAGATTGCAAAGAATAATATGGCTATAGCTTTGACAGATTTAGGAACGAAGGTTAAACTGGAGGGCGACATCAACCAAGGTGTGGCTTTGTATAAGAAAGCTTTGTATTACAACTGGCATTATGCTGATGCCATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCCATTGTATTCTATGAACTCGCCTTTCACTTCAATCCACATTGTGCGGAAGCATGTAACAATCTCGGTGTTATATATAAAGACCGTGAAAACCTTGATAAAGCTGTAGAATGCTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCACAGTCATTAAATAATCTTGGTGTTGTATACACTGTCCAGGGTAAAGTGGATGCTGCTGCAAGTATGATTGAGAAAGCTATTATGGCAAATCCGACATATGCTGAAGCATACAATAACCTAGGAGTTCTTTATAGGGATGCTGGCGATATATCTCGAGCAATTGATGCTTATGAGCAATGTCTTAAGATTGACCCTGATTCTCGGAATGCTGGTCAGAACCGCTTACTTGCAATGAATTACATAGATGAAGGAATTGATGACACACTTTTTGAGGTTCACAGGAACTGGGGTAGTCGATTCATGAGACTATATCCACGTTACACATCGTGGGGTAACACAAAAGATCCTGACCGGCCCCTTGTGATAGGCTATGTTTCACCTGATTATTTTACTCATTCTGTGTCGTATTTCATAGAAGCACCTCTTGTCTATCATGACTACTCCAATTTCAAAGTGATCGTTTATTCTGCAGTTGTCAAG 1545 0.4272 MTGAENSEGSGSEWELAGNGDNGFLESSGSAGCEGNDSVSYANVLRSRNKFADALAIYERVLENDGANVEALIGKGICLQMQNKGRLAFESFFEAIKLDPQNARALTHCGILYKDDGRLMEAAESYQRALRVDPSYRAAAECLAIVLTDIGTNTKLAGFTQDGIKKYFEALKVDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAAAERPVYAEAYCNMGVIFKNRGDLDSAISCYDRCLTVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVALYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKVDAAASMIEKAIMANPTYAEAYNNLGVLYRDAGDISRAIDAYEQCLKIDPDSRNAGQNRLLAMNYIDEGIDDTLFEVHRNWGSRFMRLYPRYTSWGNTKDPDRPLVIGYVSPDYFTHSVSYFIEAPLVYHDYSNFKVIVYSAVVK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1992 515 ProSiteProfiles TPR repeat region circular profile. 389 421 - -
Pvu1g1992 515 SMART tpr_5 35 68 IPR019734 GO:0005515
Pvu1g1992 515 SMART tpr_5 287 320 IPR019734 GO:0005515
Pvu1g1992 515 SMART tpr_5 389 422 IPR019734 GO:0005515
Pvu1g1992 515 SMART tpr_5 69 102 IPR019734 GO:0005515
Pvu1g1992 515 SMART tpr_5 355 388 IPR019734 GO:0005515
Pvu1g1992 515 SMART tpr_5 178 211 IPR019734 GO:0005515
Pvu1g1992 515 SMART tpr_5 321 354 IPR019734 GO:0005515
Pvu1g1992 515 SMART tpr_5 212 245 IPR019734 GO:0005515
Pvu1g1992 515 SMART tpr_5 253 286 IPR019734 GO:0005515
Pvu1g1992 515 SMART tpr_5 103 136 IPR019734 GO:0005515
Pvu1g1992 515 SUPERFAMILY TPR-like 252 424 IPR011990 GO:0005515
Pvu1g1992 515 Coils Coil 511 515 - -
Pvu1g1992 515 ProSiteProfiles TPR repeat profile. 212 245 IPR019734 GO:0005515
Pvu1g1992 515 ProSiteProfiles TPR repeat profile. 389 422 IPR019734 GO:0005515
Pvu1g1992 515 Gene3D - 459 514 - -
Pvu1g1992 515 Gene3D Tetratricopeptide repeat domain 258 322 IPR011990 GO:0005515
Pvu1g1992 515 ProSiteProfiles TPR repeat profile. 178 211 IPR019734 GO:0005515
Pvu1g1992 515 ProSiteProfiles TPR repeat region circular profile. 321 353 - -
Pvu1g1992 515 Gene3D Tetratricopeptide repeat domain 360 441 IPR011990 GO:0005515
Pvu1g1992 515 Gene3D Tetratricopeptide repeat domain 323 359 IPR011990 GO:0005515
Pvu1g1992 515 Gene3D Tetratricopeptide repeat domain 216 257 IPR011990 GO:0005515
Pvu1g1992 515 ProSiteProfiles TPR repeat profile. 69 102 IPR019734 GO:0005515
Pvu1g1992 515 Gene3D Tetratricopeptide repeat domain 35 147 IPR011990 GO:0005515
Pvu1g1992 515 ProSiteProfiles TPR repeat profile. 287 320 IPR019734 GO:0005515
Pvu1g1992 515 SMART sel1 178 209 IPR006597 -
Pvu1g1992 515 SMART sel1 287 318 IPR006597 -
Pvu1g1992 515 SMART sel1 321 352 IPR006597 -
Pvu1g1992 515 SMART sel1 389 420 IPR006597 -
Pvu1g1992 515 ProSiteProfiles TPR repeat region circular profile. 178 209 - -
Pvu1g1992 515 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 33 515 - -
Pvu1g1992 515 Gene3D Tetratricopeptide repeat domain 148 215 IPR011990 GO:0005515
Pvu1g1992 515 ProSiteProfiles TPR repeat profile. 321 354 IPR019734 GO:0005515
Pvu1g1992 515 ProSiteProfiles TPR repeat region circular profile. 212 244 - -
Pvu1g1992 515 Pfam Tetratricopeptide repeat 212 245 IPR001440 GO:0005515
Pvu1g1992 515 Pfam Tetratricopeptide repeat 321 354 IPR001440 GO:0005515
Pvu1g1992 515 Pfam Tetratricopeptide repeat 389 421 IPR001440 GO:0005515
Pvu1g1992 515 Pfam Tetratricopeptide repeat 178 206 IPR001440 GO:0005515
Pvu1g1992 515 ProSiteProfiles TPR repeat profile. 103 136 IPR019734 GO:0005515
Pvu1g1992 515 Pfam Tetratricopeptide repeat 103 135 IPR019734 GO:0005515
Pvu1g1992 515 Pfam Tetratricopeptide repeat 287 317 IPR019734 GO:0005515
Pvu1g1992 515 ProSiteProfiles TPR repeat region circular profile. 103 135 - -
Pvu1g1992 515 Pfam Tetratricopeptide repeat 357 382 - -
Pvu1g1992 515 SUPERFAMILY TPR-like 37 261 IPR011990 GO:0005515
Pvu1g1992 515 ProSiteProfiles TPR repeat profile. 355 388 IPR019734 GO:0005515
Pvu1g1992 515 Pfam Tetratricopeptide repeat 42 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1992 Pvu-Chr1 45815189 45823907 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1992 197 515 Glycosyltransferase AT3G11540 45.768 4.53e-79 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1992 K09667 - gmx:100779014 954.125