Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1981 ATGCCACGTTGTCACAGTTTTGAGCTGTGGCTGTGGATAACACAGATAGAAAGGAAGCTTGAGAGGTTCAGCAGAGAAGAAGACATGGAGGCAGTAGCAGGTTCCCGCCATTTCTCCACACTTTCCCTTTCTTTCTCTCACAACAGAACCCTGCGTTCTTCTTCTGCCAAATCAGTCAAGCTTTCTCCTCCTTCCACCAACGCTTCCTTATCTTCCAGAAACTGGTTCGCGAAAGAGGTATGGGGTTGGGTGAACTCGAACTCTAAGAGTGTGGCCGTGAGAAGGGACTCGCGCGGAGTAGTGGTGAGGGCTGAAATGTTCGGCCAATTGACGAGTGGCCTTGAGACTGCATGGAACAAACTCAAAGGAGAAGAGGTTTTGTCTAAAGAGAACATTGTGGAGCCTATGCGAGATATTAGGAGAGCTCTTCTAGAAGCGGATGTTAGTCTTCCTGTTGTTAGAAGGTTTGTGCAGTCTGTCAGTGATCAGGCTGTGGGTGTTGGTGTCATTCGAGGGGTGAGACCGGATCAGCAATTGGTTAAGATTGTACATGATGAACTTGTACAATTGATGGGTGGAGAGGTTTCTGAACTGGCTTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAGACCACCGTTTGTGCAAAGTTGGCAAATTATTTCAAGAAACAGGGAAAAAGTTGCATGCTAGTTGCTGGTGATGTATACAGACCTGCTGCTATTGACCAGCTTTCTATTTTGGGAAAACAGGTAGATGTGCCTGTCTATGCAGCAGGTACAGATGTTAAACCTTCAGAAATTGCCAAACAAGGCTTAGAGGAGGCAAAAAAGAAGAAAATTGATGTTGTTATTGTTGATACTGCCGGTAGACTGCAGATTGACAAGACAATGATGGATGAGTTAAAAGAAGTGAAAAGGGCATTGAATCCAACAGAAGTGTTGCTAGTTGTCGATGCAATGACTGGGCAAGAAGCTGCAGCATTAGTGACTACTTTCAATCTTGAGATTGGAATAACAGGTGCCATCTTGACAAAGCTTGATGGTGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAACTAGTAGGACGGGGGGAACGCATGGAGGATCTTGAACCTTTCTACCCTGATAGGATGGCAGGACGTATACTTGGAATGGGAGATGTTCTTTCTTTTGTTGAGAAGGCACAAGAAGTTATGCGTAAAGAAGATGCTGAAGAACTGCAAAATAAGATCATGAGTGCAAAGTTTGACTTCAACGATTTTCTAAAGCAAACACGTACTGTTGCCAAAATGGGTTCTGTATCTCGAGTCATTGGAATGATTCCTGGTATGGGGAAGGTTACTCCTTCTCAGATTAGAGATGCAGAGAAGAATTTGCAGAATATGGAAGCAATGATAGAAGCAATGACCCCAGAGGAGAGGGAAAAGCCGGAACTGTTGGCAGAGTCCCCTGTCAGGAGGAAAAGAGTTGCTCTGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTAGCTCAGCTTTTCCAAATGCGTGTTCGTATGAAGAACCTGATGGGTGTAATGCAAAGTGGATCACTTCCAACACTTAGTAATCTTGAGGAAGCACTTAAAGCGGATGAAAAGGCTCCACCTGGCACTGCAAGGAGGAGGAAAAGATCGGAATCGAGGAGTGTATTTGTGGACTCAACATCCGGAAGGCCAGCTCCTCGTGGTTTTGGGAGCAAAAGTTGA 1782 0.454 MPRCHSFELWLWITQIERKLERFSREEDMEAVAGSRHFSTLSLSFSHNRTLRSSSAKSVKLSPPSTNASLSSRNWFAKEVWGWVNSNSKSVAVRRDSRGVVVRAEMFGQLTSGLETAWNKLKGEEVLSKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVRPDQQLVKIVHDELVQLMGGEVSELAFAKSGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLSILGKQVDVPVYAAGTDVKPSEIAKQGLEEAKKKKIDVVIVDTAGRLQIDKTMMDELKEVKRALNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRKEDAEELQNKIMSAKFDFNDFLKQTRTVAKMGSVSRVIGMIPGMGKVTPSQIRDAEKNLQNMEAMIEAMTPEEREKPELLAESPVRRKRVALDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMQSGSLPTLSNLEEALKADEKAPPGTARRRKRSESRSVFVDSTSGRPAPRGFGSKS* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1981 593 Pfam SRP54-type protein, helical bundle domain 110 187 IPR013822 GO:0005525|GO:0006614
Pvu1g1981 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 458 IPR027417 -
Pvu1g1981 593 Gene3D - 109 410 IPR042101 -
Pvu1g1981 593 Gene3D - 411 535 IPR036891 GO:0006614|GO:0008312|GO:0048500
Pvu1g1981 593 Coils Coil 468 488 - -
Pvu1g1981 593 MobiDBLite consensus disorder prediction 552 593 - -
Pvu1g1981 593 Pfam SRP54-type protein, GTPase domain 205 400 IPR000897 GO:0005525|GO:0006614
Pvu1g1981 593 CDD SRP_G 206 398 - -
Pvu1g1981 593 Pfam Signal peptide binding domain 431 529 IPR004125 GO:0006614|GO:0008312|GO:0048500
Pvu1g1981 593 TIGRFAM ffh: signal recognition particle protein 108 532 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Pvu1g1981 593 SMART SRP54_N_2 106 191 IPR013822 GO:0005525|GO:0006614
Pvu1g1981 593 Hamap Signal recognition particle 54 kDa protein [srp54]. 110 550 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Pvu1g1981 593 Gene3D - 195 389 IPR027417 -
Pvu1g1981 593 SUPERFAMILY Signal peptide-binding domain 431 532 IPR036891 GO:0006614|GO:0008312|GO:0048500
Pvu1g1981 593 PANTHER BNAC02G02820D PROTEIN 80 591 - -
Pvu1g1981 593 SMART SRP54_3 205 400 IPR000897 GO:0005525|GO:0006614
Pvu1g1981 593 SMART AAA_5 204 351 IPR003593 -
Pvu1g1981 593 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 373 386 IPR000897 GO:0005525|GO:0006614
Pvu1g1981 593 MobiDBLite consensus disorder prediction 552 574 - -
Pvu1g1981 593 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 80 591 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1981 Pvu-Chr1 45700231 45706956 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1981 K03106 - gmx:100782581 1022.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1981 1 45700231 45706956 Pvu1g1981 1 45700231 45706956 ECH