Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1972 ATGGCGATGAAGAAGTTGGTGAAAGCGAGAACATTGTCAACACCGAAACCTTCTTCTTCTCCGGCGATCCCCAACCTCCCTCTCCCCTCTCCACCCTCAGAGACACCCGTGTCCCCGGTTCACTACGCCCGCTTCCTGGACTTCTTAAAGGCCCATTGGGCCCCACCGTTCAGCCCAGACACTCTTCTCCACTTCCTGAAATCGAAGCTCCACCACCACCCCTCCTTCTCCCAATTCGACTTCCACCTCTTCACCTGGGCCTCCTCCCTCGACTCCTTCCACCACACCCACGCCACCTTCCACTGGATGGCCCGCACCCTCGCCGCCACCCATCGCTTCCCCCAGCTCCGTTCCCTCCTCCATCTCATCGCCACCCACCCGTGCCCTTGCTCTCCCTCCATCTTCTCCTGCCCCCACACCCAGCCCATCTTCTCCCACGCCATTCACGCCTTCTCCAAATCCTCCCAACTCCACCACGCCCTCTCCGCATTCCACTCCATGACCAAACTCATCGACTCCAAGCCAGATGTCGTCGTTTTCAACGTCCTCATCCACGCCTTCGTCAAACGCGGTAACCTAACCCAAGCCCTCCAGTTTTACCGCGAGATGGTGGTCACTCACCGCGTTAAGCCTGATGTTTTCACCTTCAACATTTTGATCAGTGGTTACTGTCGGAACTCGCAGTTCGCGTTGGCGTTGGAGGTGTTTCACGAGATGGGGAAAGCGGGGTGTGAGCCCAATGTCGTTACTTTCAATACCTTGATTCGGGGGATGTTTAGAGAGGGGAGGGTTGAGGACGCCATTGGGATGGCTCGCGAGATGGTTCAATTAAGGTGTGAGCTTTCGTGTGTTACTTGTGAGATTTTGGTTCAAGGGCTTTGTAAGGAAGGGAGGGTTTTGCAGGCGTGTGAGTTGTTGCTGGAGTTTTCAGAAAAGGGGGTTTTGCCTGAGGGGTTTGATTGTTTTGCTTTGGTGGAGGTATTGTGTGGGCAAGGGTGTGCTCTGAGAGCGTTGGAAGTTGTTTATGAGTTGTGGAATGGGGGGAGTGTTCCGAGTTTGGTTGCTTGTATTGTTGTGGTTGATGGGTTGAGGGGGTTGGGGAAGATTGATGAGGTGCAGAGATTGGTGAAAAGGATGCTTGATGAGGGTATGGTGCTGGATGTTGTGACTTTCAATTGTGTTCTTCGGGATATTTGCGATGCACGGAGAACCAATGAGGCGAATAGGTTGATGTTAGTTGCTTTGAGCAAGGGTTTGGAACCAGATGACATGACTTATAGGACTTTGGTTATAGGGTACATGGAAGAGGGAGGGAGGGAGGAAGGAGAGTTACTGGTGAACGAAATGTTGGATAGGGGGTTTATACCTGATCTTGCTTCATATAATAAGTTGATCAGTGGATTGTCTAATTGCAGGCGCTCTACAAGCCGTCAAGTAAACAAATTTGATCGCTGA 1455 0.523 MAMKKLVKARTLSTPKPSSSPAIPNLPLPSPPSETPVSPVHYARFLDFLKAHWAPPFSPDTLLHFLKSKLHHHPSFSQFDFHLFTWASSLDSFHHTHATFHWMARTLAATHRFPQLRSLLHLIATHPCPCSPSIFSCPHTQPIFSHAIHAFSKSSQLHHALSAFHSMTKLIDSKPDVVVFNVLIHAFVKRGNLTQALQFYREMVVTHRVKPDVFTFNILISGYCRNSQFALALEVFHEMGKAGCEPNVVTFNTLIRGMFREGRVEDAIGMAREMVQLRCELSCVTCEILVQGLCKEGRVLQACELLLEFSEKGVLPEGFDCFALVEVLCGQGCALRALEVVYELWNGGSVPSLVACIVVVDGLRGLGKIDEVQRLVKRMLDEGMVLDVVTFNCVLRDICDARRTNEANRLMLVALSKGLEPDDMTYRTLVIGYMEEGGREEGELLVNEMLDRGFIPDLASYNKLISGLSNCRRSTSRQVNKFDR* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1972 484 Pfam PPR repeat 174 204 IPR002885 -
Pvu1g1972 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Pvu1g1972 484 Pfam PPR repeat family 211 257 IPR002885 -
Pvu1g1972 484 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 10 473 - -
Pvu1g1972 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Pvu1g1972 484 TIGRFAM PPR: pentatricopeptide repeat domain 178 213 IPR002885 -
Pvu1g1972 484 TIGRFAM PPR: pentatricopeptide repeat domain 425 457 IPR002885 -
Pvu1g1972 484 TIGRFAM PPR: pentatricopeptide repeat domain 249 282 IPR002885 -
Pvu1g1972 484 TIGRFAM PPR: pentatricopeptide repeat domain 284 316 IPR002885 -
Pvu1g1972 484 TIGRFAM PPR: pentatricopeptide repeat domain 214 248 IPR002885 -
Pvu1g1972 484 Gene3D Tetratricopeptide repeat domain 91 244 IPR011990 GO:0005515
Pvu1g1972 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Pvu1g1972 484 MobiDBLite consensus disorder prediction 1 31 - -
Pvu1g1972 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Pvu1g1972 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 211 IPR002885 -
Pvu1g1972 484 PANTHER ATPASE EXPRESSION PROTEIN 3 10 473 - -
Pvu1g1972 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Pvu1g1972 484 Gene3D Tetratricopeptide repeat domain 245 311 IPR011990 GO:0005515
Pvu1g1972 484 Pfam PPR repeat 425 454 IPR002885 -
Pvu1g1972 484 Pfam PPR repeat 284 314 IPR002885 -
Pvu1g1972 484 Gene3D Tetratricopeptide repeat domain 312 415 IPR011990 GO:0005515
Pvu1g1972 484 Gene3D Tetratricopeptide repeat domain 416 481 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1972 143 472 Glycosyltransferase AT1G05670 32.121 6.12e-47 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1972 - - gmx:100796880 757.288