Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1944 ATGGCATCCATATCTGTGAGTGATGATTCTGTCATGGAAAAAAAATATCGCCATAGCTGGCCTTCGTTGGGTTTCGAACTTGGTTGGACGCCATCTTTGTTAAGGAGTGGACGGAGCAAGGAAGAAGACAGTGAGGAGGATCTGAAATGGGCGGAGATGCAGCGTTTACCTACGCTAGAACGCATAAGAAAAGGGATGTTGAGCGTAGTGCTTGATAATGGAAAGGTTGTACATTGCCATGTTGATGTGGCTGATCTTAGGTTGCAAGACAAAAAGCACCTATTGGAGAGAGTACTCAAATTTGTTGATGATGACAATGAGAAATTTCTTCGTAAACTTAGAGATAGAATTAACAGGGTGGGGATTATAATTCCAAAAATTGAAATCAGATTCGAGAATGTATCAGTGGAGGGAAATGTTCATGTTGGAACTAGATCACTTCCTACTCTGCTTAATGTTACTCTCAATAGTTTTGAGACGATTCTTGGATTGGTTGGCCTTGCATCTTCGAAGAAGAGAAGAATTAATATTCTTAAAGATGTTAGTGGAATTGTCAAACCATCAAGGATGACCCTACTTCTAGGTCCTCCAGGTGCAGGAAAAACAACATTACTTCTAGCACTTGCAGGGAAACTTGACCAGGATTTAAAGGTTGGTGGGAAAGTAAGTTATTGTGGGCATGAACTTAACGAATTTGTGTCTAAGAAAACTTGTGCCTACATTAGTCAGAATGATGTTCACTATGGAGAAATGACAGTGAGAGAGACATTAGATTTTACAGGACGTTGTCTAGGTGTAGGGACGAGGTATGAAATGTTGGAAGAACTTCTGAGAAGGGAGAAACAAAAAGGAATCAAACCTGATGCTGACATTGATGCATTTATGAAGGCTACAGTCATATCTGGTCAAAAAACCAATTTGCAAACAGATTATGTTCTTAAGATACTTGGATTGGATATCTGTGCTGAAACCGTGGTTGGTAATAACATGAGCAGGGGCATCTCAGGTGGACAAAGAAAGCGTGTCACAACAGGGGAGATGCTGGTAGGACCGGCAAAGGCACTTTTTATGGATGAAATATCAACAGGACTGGACAGTTCCACCACGTTTCAGATATGCAAGTTCATGAGCCAAATTGTTCATATAATGGATGAAACCATGGTCATATCTCTTCTTCAACCACCACCAGAGACATATGAACTGTTTGATGACATTATTCTACTTTCAGAAGGTCAGATTGTGTACCAAGGTCCACGTCAAAATGTGCTTGAGTTCTTTCAAAACATGGGTTTCCAATGTCCTCCAAGAAAGGGAGTTGCTGACTTTCTACAAGAAGTAACATCTAAGAACGATCAGCAGCAGTATTGGTGTAGAAGAGATGAACCTTACAGATATGTTTCAGTTCCTCAATTTGCAGAGGCTTTCCATTCGTTTCACATAGGAGAGAAGGTTGCAGCAGAGCTTAAGGTTCCTTATGATAAGAACCAAACTCATCGTGCTGCCTTAGTTAAAGACAAGTATGGTATATCAAGTTGGGAACTGCTGAAGGCATGTTTCTCAAGAGAATGGTTGCTTATGAAACGCGACAAGTTTGTCTACGTATATAGGATAATACAGTTAATTGTATTATCTATTATAGGCTCTACTGTGTTTCTTAGAGTTAAAATGCCAGTGGGCACTGTTGAAGACGGGGGAAAGTTCTTTGGAGCACTGTTTTTTTCTCTAGTGAACATGTTGTTCAATGGGTTCACAGAACAAGCCATGATTGTTGCCAGGCTTCCTGTTTTTTACAAACAAAGGGATTTCATGTTCTACCCTGCATGGGCGTTTGCCTTACCTATATGGGTTCTCAGGATCCCCATTTCCGTTGTGGAATCAGCAGTATGGATTGTTCTAACATACTATCCAATTGGATTTGCTCCCTCAGCTAGCAGATTTTTCAAACAATTATTGGCATTGTTTGGCATCCATCAAATGTCCATCTCTCTATTCCGGCTCATTGGTGCAATTGGTAGAACAAATGTTGGTGCTGCTATACTGAGTGGTTTGATATATCAAATAATCTTTGCGCTTGGAGGATTTGTTGTCTCAAAAAATAATATCAAACCATGGTTGAAATGGGGTTACTATGTTTCTCCTCTGAGTTATGGTCAGAATGCCTTAGTAGTAAATGAATTTTTGGATGAAAGATGGAGTAAACCAAATACAGACTCTAGAATTGATGCACCTACCGTTGGAAAAGTACTTCTCAAGTCTAAAGGATTTTACACAGAAGATTACTGGTTCTGGATATGCATTGGAGCTTTGTTTGGGTTTGTTCTTCTTTTCAACCTTCTCGCCATTGCTGCATTGACTTATTTGAATGGAGGTCAAGGCATAGACATGGCAGTAAGAAATGCTTCTCGCCGAGAAAGAAGTACAGGAATGGTCATGCCGTTTCAACCTCTTTCACTTGCATTCAATAATGTGGACTACTACGTAGACATGCCTGCTGAAATGAAAAGTCAAGGAATCGATGAAGATAGACTTCAACTACTGCATGATGCCAGCGGTGCTTTTAGACCAGGTGTATTGACAGCCCTTATGGGTGTTAGTGGTGCTGGGAAGACAACCCTTATGGACGTATTAGCTGGAAGAAAAACAGGTGGATACATCGAAGGAAGTATTAGCATCTCAGGTTACCCAAAGAACCAAGCAACATTTGCTCGTGTCAGTGGCTACTGTGAACAGAATGACATTCATTCTCCCAATGTTACTGTATATGAATCACTATTATTTTCAGCATGGCTTCGCCTTCCATCAGATGTAAATGCACAAACGAGAAAGATGTTTGTTGAAGAAATTATGGAGTTGATTGAGCTTAAATCAATCAAAGATGCACTTGTGGGGCTTCCAGGCGTAAACGGTCTATCAACTGAACAAAGGAAGAGGCTTACTATTGCGGTAGAATTGGTTGCCAACCCTTCGATTATCTTTATGGATGAACCAACATCTGGCCTTGATGCTAGAGCCGCTGCTATTGTTATGCGAACTGTGAGAAACACAGTGGACACTGGCAGAACCGTTGTGTGCACAATTCATCAACCAAGCATAGACATTTTTGAAGCTTTTGATGAGTTACTGTTGTTGAAAAGAGGAGGGAAAGTTATCTATGCTGGACCTCTTGGTCACTATTCACAGCAGCTCATTGAATACTTTGAAGCTATTCCAGGGGTTCCAAAAATCAAGGATGGCTATAATCCTGCAACATGGATGCTTGAGATTAGCACTCCCTCATATGAAGCTCAACTTGGAATAGATTTTGCGGATATTTACGTTAACTCGACTCTTTACCGAGATAATCAAGAGCTTATCAAAGAACTCAGTACTCCATCACCAAATTCCAATGACTTGCACTTCCCGACCAAATATTCCCAATCATTCTCTGTGCAGTGCAAGGCTTGTTTTTGGAAACAGTACTGGTCTTATTGGAGAAATCCTTCCTACAATGGCCCTCGATTCGTCTTCACAATACTCATTGGGATAATCTTTGGTCTAATCTTCTTGAATAAAGCCAAAAATATCAAAAAGCAACAAGATATATGGGATCTTCTAGGAGCCATGTATGCTGCTGTGATGTTCCTTGGAACCTCGAACACTATGGGAGTACAGCCAATTCTTGACATAGAAAGAACTGTATTGTATCGTGAAAGAGCAGCAGGGATGTATTCAACATTGACCTATGCAGTTAGTCAGGTGGCAGTGGAGGGAATTTATAATGCTATTCAAACAACAGTCTTCTGTGTCATAATCTACTCCATGATGGGGTTTGAATGGAAGGCGACGAAATTTTTTTCATTCTACTACTTCATATTCATTTGTTTGATCTACTACACACTATATGGGATGATGATTGTTTCCCTAACCCCGAGTTTCCAAATTGCATCCATTTGCAATTCCTTCTTCTTGACCGTCTGGAACACCTTCTGTGGCTTTATCATTCCTAGGACGCAAATTCCTGTATGGTGGAGATGGTACTATTGGCTTACTCCTAATGCTTGGACACTGTATGGCATTGTTACCTCTCAACTTGGTGATGATAATGCAGAAGTGGAAATTCCAGGAGCTAAAAACATGATGGTGAAGGAACTGATTAAGGAAACCTTCGGTTATGAGTATCACTTTCTGCCAGTGGTCGTTATTGTTCACCTAGGCTGGGTTCTTCTTTTCTTGTTTGTTTTTGCCTATGGCATCAAATTCCTTAACTTCCAAAAACGATGA 4260 0.4052 MASISVSDDSVMEKKYRHSWPSLGFELGWTPSLLRSGRSKEEDSEEDLKWAEMQRLPTLERIRKGMLSVVLDNGKVVHCHVDVADLRLQDKKHLLERVLKFVDDDNEKFLRKLRDRINRVGIIIPKIEIRFENVSVEGNVHVGTRSLPTLLNVTLNSFETILGLVGLASSKKRRINILKDVSGIVKPSRMTLLLGPPGAGKTTLLLALAGKLDQDLKVGGKVSYCGHELNEFVSKKTCAYISQNDVHYGEMTVRETLDFTGRCLGVGTRYEMLEELLRREKQKGIKPDADIDAFMKATVISGQKTNLQTDYVLKILGLDICAETVVGNNMSRGISGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQICKFMSQIVHIMDETMVISLLQPPPETYELFDDIILLSEGQIVYQGPRQNVLEFFQNMGFQCPPRKGVADFLQEVTSKNDQQQYWCRRDEPYRYVSVPQFAEAFHSFHIGEKVAAELKVPYDKNQTHRAALVKDKYGISSWELLKACFSREWLLMKRDKFVYVYRIIQLIVLSIIGSTVFLRVKMPVGTVEDGGKFFGALFFSLVNMLFNGFTEQAMIVARLPVFYKQRDFMFYPAWAFALPIWVLRIPISVVESAVWIVLTYYPIGFAPSASRFFKQLLALFGIHQMSISLFRLIGAIGRTNVGAAILSGLIYQIIFALGGFVVSKNNIKPWLKWGYYVSPLSYGQNALVVNEFLDERWSKPNTDSRIDAPTVGKVLLKSKGFYTEDYWFWICIGALFGFVLLFNLLAIAALTYLNGGQGIDMAVRNASRRERSTGMVMPFQPLSLAFNNVDYYVDMPAEMKSQGIDEDRLQLLHDASGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARVSGYCEQNDIHSPNVTVYESLLFSAWLRLPSDVNAQTRKMFVEEIMELIELKSIKDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGKVIYAGPLGHYSQQLIEYFEAIPGVPKIKDGYNPATWMLEISTPSYEAQLGIDFADIYVNSTLYRDNQELIKELSTPSPNSNDLHFPTKYSQSFSVQCKACFWKQYWSYWRNPSYNGPRFVFTILIGIIFGLIFLNKAKNIKKQQDIWDLLGAMYAAVMFLGTSNTMGVQPILDIERTVLYRERAAGMYSTLTYAVSQVAVEGIYNAIQTTVFCVIIYSMMGFEWKATKFFSFYYFIFICLIYYTLYGMMIVSLTPSFQIASICNSFFLTVWNTFCGFIIPRTQIPVWWRWYYWLTPNAWTLYGIVTSQLGDDNAEVEIPGAKNMMVKELIKETFGYEYHFLPVVVIVHLGWVLLFLFVFAYGIKFLNFQKR* 1420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1944 1419 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 818 1070 IPR003439 GO:0005524
Pvu1g1944 1419 Pfam ABC-2 type transporter 514 726 IPR013525 GO:0016020|GO:0140359
Pvu1g1944 1419 Pfam ABC-2 type transporter 1144 1356 IPR013525 GO:0016020|GO:0140359
Pvu1g1944 1419 CDD ABCG_PDR_domain2 815 1053 IPR034003 -
Pvu1g1944 1419 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 162 435 IPR003439 GO:0005524
Pvu1g1944 1419 Gene3D - 165 466 IPR027417 -
Pvu1g1944 1419 Pfam Plant PDR ABC transporter associated 731 788 IPR013581 -
Pvu1g1944 1419 Pfam ABC-2 type transporter 393 446 IPR043926 GO:0140359
Pvu1g1944 1419 Pfam ABC-2 type transporter 1027 1087 IPR043926 GO:0140359
Pvu1g1944 1419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 434 IPR027417 -
Pvu1g1944 1419 PANTHER ATP-BINDING CASSETTE TRANSPORTER 40 1419 - -
Pvu1g1944 1419 Pfam ABC-transporter N-terminal 104 153 IPR029481 -
Pvu1g1944 1419 PANTHER ABC TRANSPORTER G FAMILY MEMBER 34-RELATED 40 1419 - -
Pvu1g1944 1419 Gene3D - 832 1068 IPR027417 -
Pvu1g1944 1419 Pfam ABC transporter 846 998 IPR003439 GO:0005524
Pvu1g1944 1419 Pfam ABC transporter 178 360 IPR003439 GO:0005524
Pvu1g1944 1419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 1057 IPR027417 -
Pvu1g1944 1419 SMART AAA_5 855 1047 IPR003593 -
Pvu1g1944 1419 SMART AAA_5 187 419 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1944 Pvu-Chr1 45416707 45425517 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1944 K08711 - gmx:100790545 2373.59