Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1943 ATGGCATCCACAGACGCTATAAGCGATTTGGTGACAGGAAAAAGAAATCATGGGAACTGGTCGAAGAGTTACAAGAGGGATGGGACAGCAGAGATAACCGACATAAGGAGCGGAGACACTGAAGAGGATAATGAATGGGCTGCCATCCAGCGTTTGCCCACTTTCGAGAGAATGAGGAAAGGGATGCTAAGTGTAGTGCTTGATAATGGAAAGCTTTTAAGTTACCAAGTTGATGTCACTAATCTCAGATTGCAGGACAGGAAGCAGCTGTTGGAGAGTGTACTCAAATTTGTGGAAGAAGACCATGACAAGTTTCTTCGTAGACTTAGAGACAGAATTGATAGGGTGGGGATTGAAATTCCAAAAATAGAAGTCCTATACAGAAATTTATCAGTGGAGGGAGACATGCATGTTGGAAGTAGAGCACTTCCTACCTTGTTTAATGTTACTCTCAATACTTTTGAGCGAATTCTGGGATTGTTTGGCCTTGCACCTTCGCAGAAGAGAAAACTTACTATTCTTAAAGATGTTAGCGGAATTCTCAAACCATCGAGGATGACCCTACTTCTAGGTCCTCCAGGTGCAGGGAAAACAACATTACTTCTAGCACTTGCAGGAAATCTTGACCAAAATTTAAAGGTTTCAGGGAGAATAACATATTGTGGTCATGAACTGAATGAATTTGTTGCTAAAAAAACTTGTGCCTATATTGGTCAACATGACCTTCACAGTGGAGAAATGACAGTGAGAGAGACATTAGATTTTTCGGGACGTTGTCTAGGTGTTGGGACGAGGTATGAAATGTTAGAAGAACTTTTACTAAGGGAGAAACAAAAAGGAATAAAGCCAGATACTCCTGAGATTGATGCATTTATGAAGGCCACAGCCATAGCAGGTCAAAAAACCAATTTCCAAACAGACTATGTTCTCAAGATACTTGGATTGGATACTTGTGCTGACACTGTGGTTGGTGATAACATGAGAAGGGGCATCTCTGGTGGTCAAAGAAAGCGTGTCACAACAGGGGAGATGCTAGTGGGACCAGCAAAGGCACTTTTTATGGACGAAATATCAACAGGACTGGACAGTTCCACCACGTTTCAGATATGCAAGTTCATGAGCCAAATTGTTCATATAATGGATAAAACCATGGTCATATCTCTTCTTCAACCACCACCAGAGACATATGAACTGTTTGATGACATTATCCTACTTTCAGAAGGTCAGATTGTGTACCAAGGTCCACGTCAACATGTGCTTGAGTTCTTTCAAAACATGGGTTTCCAATGTCCTCCAAGAAAGGGAGTTGCTGACTTTCTACAAGAAGTAACGTCTAAGAACGATCAGCAGCAGTATTGGTGTAGAAGAGATGAACCTTACGGATATGTTTCAGTTCCTCAATTTGCAGAGGCTTTCCATTCGTTTCACATAGGAGAGAAGGTTGCAGCAGAGTTTAAGGTTCCTTATGATAAGAACCAAACTCACCGTGCTGCCTTAGTTAAAGACAAGTATGGTCTATCAAGTTGGGAACTGCTGAAGGCATGTTTTTCAAGAGAATGGTTGCTTATGAAACGTGACACTTTTGTCTATGCATATAGAATAGTACATATAGTTGTCTTAACTATTTTGGGATTTACTTTGTTCCTCAAAACTGAAATGCCAGTGGGCAATGTTGAAGATGGAAGGAAGTTTTTTGGAGCACTGTTTTTCTCTCTTATAAACATATTGTTTAATGGGTTCTCAGAACAAGCCATGGTTGTTTCCAGGCTCCCTGTCTTTTACAAGCAAAGGGATTTCAAGTTCTACCCTGCATGGGCGTTTCTCTTACCTATATGGGTTCTCAGGATCCCTATTTCCTTTGTGGAATCAGCAATATGGGTTGTTCTAACATACTATCCAATTGGATTTGCTCCCTCAGCTAGCAGATTTTTCAAACAATTCTTGCTACTGTTTAGCGTTCATCAGATGGCTAGCTCTCTATTTCGGCTCGTTGGAGCAATTGGTAGATCACATGTTGTTGCTAATATAATGAGTGGCTTGACTTATCAACTAATGTTTGTGCTTGGAGGATTTGTTCTCTCCAAAGATGATACCAAGCCATGGATGATATGGGGCTATTATGTTTCTCCTATGATGTATGCTCAGAATGCCATGGTACTGAATGAATTTTTGGATGAAAGATGGAGTAAACCAAATACAGACTCTAGATTTGATGAACCTACAGTTGGAAAAGTACTTCTCAAATCTAGAGGATTTTACACAGAAGATTACTGGTTTTGGATAGGCATTGGAGCTTTGTTTGGGTTTGTTCTTCTTTTCAACCTTCTCTGCATTGCTGCATTAGCTTATTTGAATGCTATTGGTGATTCAAAAGCATTCATCTCAGATGAAGACAAGAAGAATGGAAATTCAGTATCTAGACATGTCACTGAAGGAGGTCCAGGTATAGACATGACTGTGAGAAATGCTTCTCCGCAAGAACGAAGAACACGAATGGTGTTGCCGTTTCAACCTCTTTCACTTACATTCAATCATGTGGACTACTATGTAGACATGCCTGCAGAAATGAAAAGTCAAGGAATCGATGAAGATAGACTTCAACTACTGCATGATGCCAGCGGTGCTTTTAGACCAGGTGTATTGACAGCCCTTATGGGTGTTAGTGGTGCTGGGAAGACAACCCTTATGGACGTATTAGCTGGAAGAAAAACAGGTGGATACATCGAAGGAAGTATTAGCATCTCAGGTTACCCAAAGAACCAAGCAACATTTGCTCGTGTCAGTGGCTACTGTGAACAGAATGACATTCATTCTCCCAATGTTACTGTATATGAATCACTATTATTTTCAGCATGGCTTCGCCTTCCATCAGATGTAAATGCACAAACGAGAAAGATGTTTGTTGAAGAAATTATGGAGTTGATTGAGCTTAAATCAATCAAAGATGCACTTGTGGGGCTTCCAGGCGTAAACGGTCTATCAACTGAACAAAGGAAGAGGCTTACTATTGCGGTAGAATTGGTTGCCAACCCTTCGATTATCTTCATGGATGAACCAACATCTGGCCTTGATGCTAGAGCCGCTGCTATTGTTATGAGAACTGTGAGAAACACAGTGGACACTGGCAGAACCGTTGTGTGCACAATTCATCAACCAAGCATAGACATTTTTGAAGCTTTTGATGAGTTACTGTTGTTGAAAAGCGGAGGGAAAGTTATCTATGCTGGACCTCTTGGTTACCATTCACAGCAGCTCATAGAATATTTTGAAGCTATTGTAGGGGTGCAGGAAGTCAAGGATAGCTATAATCCTGCCACATGGATGCTTCAGATCACCACCCCTTCAGTTGAAGCTCAACTAGGAATAGATTTTGCTGAGATTTACGCAAACTCAACACTTCACAGAAGGAATCAAGAGCTTATCAAAGAGCTCAGTAGTCCACCACCAGGTTCCAATGACTTGTACTTCCCAACCAAATATTCCCAATCATTCTTTGTGCAGTGCAAAGCTTGTTTTTGGAAACAATTTTGGTCATATTGGAGAAATCCTTCGTACAATGCAGTCAGATTCTTCTTCACGATAGTAGTTGGGATAGTCTATGGTATAATCTTCTGGAACAAAGCCAAGCATGTCCAAAAGCAACAAGATTTATTTGATCTTTTAGGAGCCATGTACGCTGCTGTGATTTTCCTTGGAAGCGGGAACGCTATGGGAGTGCAGCCAATTGTTGACAGAGAAAGAAATGTATTATATCGTGAAAGAGCAGCAGGGATGTATTCAACATTGCCTTATGCAATTAGTCAGGTGGCAGTAGAGGCAATTTATAACGCCATTCAAGCAACCATCTACAGTGTCTTCATCTACTCCATGATGGGGTTTGAATGGAAGGTGCTGAAATTTCTTTGGTTCTTCTACATAATGCTGATGTGTTTGATCTACTACACGCTATATGGGATGATGATTGTTGCACTGACTCCGAGTTTCCAAATTGCTGTCACTTGTAATTCCTTCTTCTTGAGCATCTGGGGCACCTTCTGTGGCTTTATCATTCCTAGAACGCAAATTCCTGTATGGTGGAGATGGTACTATTGGCTTACTCCTAATGCTTGGACACTGTATGGCATCGTTACCTCTCAACTTGGAGATGAAAATGCAGAAGTGGAAATTCCAGGAGCTGAAAACATGGTGGTGAAGGAAGTGCTTAAGGAAAACTTCGGTTATGAGTATCAATTTCTCCCAGTGGTTGCTGTTGTTCAGATAGGCTGGGTTCTCCTTTTCTTGTTTGTTTTTGCCTATAGCATCAAATTCCTTAACTTCCAAAAAAGATGA 4329 0.41 MASTDAISDLVTGKRNHGNWSKSYKRDGTAEITDIRSGDTEEDNEWAAIQRLPTFERMRKGMLSVVLDNGKLLSYQVDVTNLRLQDRKQLLESVLKFVEEDHDKFLRRLRDRIDRVGIEIPKIEVLYRNLSVEGDMHVGSRALPTLFNVTLNTFERILGLFGLAPSQKRKLTILKDVSGILKPSRMTLLLGPPGAGKTTLLLALAGNLDQNLKVSGRITYCGHELNEFVAKKTCAYIGQHDLHSGEMTVRETLDFSGRCLGVGTRYEMLEELLLREKQKGIKPDTPEIDAFMKATAIAGQKTNFQTDYVLKILGLDTCADTVVGDNMRRGISGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQICKFMSQIVHIMDKTMVISLLQPPPETYELFDDIILLSEGQIVYQGPRQHVLEFFQNMGFQCPPRKGVADFLQEVTSKNDQQQYWCRRDEPYGYVSVPQFAEAFHSFHIGEKVAAEFKVPYDKNQTHRAALVKDKYGLSSWELLKACFSREWLLMKRDTFVYAYRIVHIVVLTILGFTLFLKTEMPVGNVEDGRKFFGALFFSLINILFNGFSEQAMVVSRLPVFYKQRDFKFYPAWAFLLPIWVLRIPISFVESAIWVVLTYYPIGFAPSASRFFKQFLLLFSVHQMASSLFRLVGAIGRSHVVANIMSGLTYQLMFVLGGFVLSKDDTKPWMIWGYYVSPMMYAQNAMVLNEFLDERWSKPNTDSRFDEPTVGKVLLKSRGFYTEDYWFWIGIGALFGFVLLFNLLCIAALAYLNAIGDSKAFISDEDKKNGNSVSRHVTEGGPGIDMTVRNASPQERRTRMVLPFQPLSLTFNHVDYYVDMPAEMKSQGIDEDRLQLLHDASGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARVSGYCEQNDIHSPNVTVYESLLFSAWLRLPSDVNAQTRKMFVEEIMELIELKSIKDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKSGGKVIYAGPLGYHSQQLIEYFEAIVGVQEVKDSYNPATWMLQITTPSVEAQLGIDFAEIYANSTLHRRNQELIKELSSPPPGSNDLYFPTKYSQSFFVQCKACFWKQFWSYWRNPSYNAVRFFFTIVVGIVYGIIFWNKAKHVQKQQDLFDLLGAMYAAVIFLGSGNAMGVQPIVDRERNVLYRERAAGMYSTLPYAISQVAVEAIYNAIQATIYSVFIYSMMGFEWKVLKFLWFFYIMLMCLIYYTLYGMMIVALTPSFQIAVTCNSFFLSIWGTFCGFIIPRTQIPVWWRWYYWLTPNAWTLYGIVTSQLGDENAEVEIPGAENMVVKEVLKENFGYEYQFLPVVAVVQIGWVLLFLFVFAYSIKFLNFQKR* 1443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1943 1442 Coils Coil 81 101 - -
Pvu1g1943 1442 PANTHER ATP-BINDING CASSETTE TRANSPORTER 33 1442 - -
Pvu1g1943 1442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 864 1077 IPR027417 -
Pvu1g1943 1442 Pfam ABC transporter 174 357 IPR003439 GO:0005524
Pvu1g1943 1442 Pfam ABC transporter 869 1021 IPR003439 GO:0005524
Pvu1g1943 1442 Gene3D - 161 460 IPR027417 -
Pvu1g1943 1442 PANTHER ABC TRANSPORTER G FAMILY MEMBER 34-RELATED 33 1442 - -
Pvu1g1943 1442 Gene3D - 855 1090 IPR027417 -
Pvu1g1943 1442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 431 IPR027417 -
Pvu1g1943 1442 Pfam ABC-2 type transporter 1167 1379 IPR013525 GO:0016020|GO:0140359
Pvu1g1943 1442 Pfam ABC-2 type transporter 511 723 IPR013525 GO:0016020|GO:0140359
Pvu1g1943 1442 SMART AAA_5 878 1070 IPR003593 -
Pvu1g1943 1442 SMART AAA_5 183 416 IPR003593 -
Pvu1g1943 1442 CDD ABCG_PDR_domain2 838 1076 IPR034003 -
Pvu1g1943 1442 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 841 1093 IPR003439 GO:0005524
Pvu1g1943 1442 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 158 432 IPR003439 GO:0005524
Pvu1g1943 1442 Pfam ABC-transporter N-terminal 99 149 IPR029481 -
Pvu1g1943 1442 CDD ABCG_PDR_domain1 141 414 IPR034001 -
Pvu1g1943 1442 Pfam ABC-2 type transporter 390 440 IPR043926 GO:0140359
Pvu1g1943 1442 Pfam ABC-2 type transporter 1050 1116 IPR043926 GO:0140359
Pvu1g1943 1442 Pfam Plant PDR ABC transporter associated 728 794 IPR013581 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1943 Pvu-Chr1 45397724 45407598 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1943 K08711 - gmx:100790545 2409.02