Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1940 ATGCAGAGTGAGCAACAGAGCAACAACAACAACCAGTTGGTAGTGCAGAATTCGGGGAGCCTAAGCTTCAGCAGCCATTTGTCGAAGGAAGATGAGGAGATGTCCAGGTCTGCTCTCTCCACCTTCAGGGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAGCTTCAGTTGGGTCGTGTTGAGGAAGAAACCAAGCGTCTTGCCACCATTCGTGAGGAGAAAGAATACAAAGACGCTCTTGAATCTTTTAATGAAAAGAACAGGGAAAAAGTACAGCTAATCACCAAGTTAATGGAGTTGGTGAGTGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGCAAGAACGTAGATTCGATGCAATGA 393 0.458 MQSEQQSNNNNQLVVQNSGSLSFSSHLSKEDEEMSRSALSTFRAKEEEIERKKMEVREKVQLQLGRVEEETKRLATIREEKEYKDALESFNEKNREKVQLITKLMELVSESERLRMKKLEELSKNVDSMQ* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1940 130 Pfam Transcriptional activator 78 128 IPR007033 -
Pvu1g1940 130 Pfam Transcriptional activator 16 80 IPR007033 -
Pvu1g1940 130 Coils Coil 39 59 - -
Pvu1g1940 130 MobiDBLite consensus disorder prediction 1 25 - -
Pvu1g1940 130 PANTHER ANKYRIN REPEAT 30A-LIKE PROTEIN (DUF662) 1 82 - -
Pvu1g1940 130 PANTHER ANKYRIN REPEAT 30A-LIKE PROTEIN (DUF662) 79 129 - -
Pvu1g1940 130 PANTHER RAB6-INTERACTING PROTEIN GORAB 79 129 IPR007033 -
Pvu1g1940 130 PANTHER RAB6-INTERACTING PROTEIN GORAB 1 82 IPR007033 -
Pvu1g1940 130 MobiDBLite consensus disorder prediction 26 50 - -
Pvu1g1940 130 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1940 Pvu-Chr1 45329770 45331910 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1940 - - gmx:100499923 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1940 1 45329770 45331910 Pvu7g1067 7 11918972 11920798 ECH
Pvu1g1940 1 45329770 45331910 Pvu1g1940 1 45329770 45331910 ECH
Pvu1g1940 1 45329770 45331910 Pvu11g0941 11 9166059 9168277 ECH