Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1925 ATGATGGTGTTTGGAACTCGTTCTGCTCTTCGCCTTCCTCCCAAATCGCACTTGAACAATTTCAGTTCCTTCTTCTGCTCCCAATCACTCACACTCTGCGAATCCGACCCAAAATACCAGCATCGCCTTAAAAAGGTTCAAAAGCTCGAAGACTTACTCAACCGCGGACGCACAATCACTGCGAGAAGGTTCCTCAAATCCCTGTTTCTCTCCAAAACCACATTCTCCTCTCTCTGCGAACTCCACGCCCACGTCTCTAAACCCCTCTTTTCGGACACCCTCTTATGGCTCTGCTCCGTTTCCAAAATGCTCAACGAAGCCACCGACTTGTACTTTTCAATGCGAAAAGACGGATTTCTCCCCTCCACGCGTTCCGTCAATCGTTTGCTCCGAACCCTGGTGGCTTCCCGACATTTCGAGAAAACCCTTTCCGTCTTCGCTGACGTTGTGGATTCTGATATTCAGCCCGATGTTATTACTTACGGGAAAGCTGTTCAGGCGGCGGTGATGTTGAAGGACCTCGATAAGGGTTTTGATTTGGTGAGTTCCATGGAAAAGGAAGGACTGGGTCCATATGTTTTTGCTTATAACTTGATCTTGGGTGGGTTGTGTAAAGTCAGAAGGATCAAGGATGCTAGGAAACTGTTCGATGAAATGATTCGCAGAAATATTGCTCCGAATACTGTAACTTATAACACGCTCATTGATGGATATTGTAAGGTGGGTGAGTTAGAGGAAGCTTTTAGCTTCAAGGAGAGGATGAAGGAGCTGAATGTGGAGTGTAATCTTGTCACTTATAATTGCTTGTTAAGTGGCCTCTGTGGCTCCGGCAGGGTGGAAGAAGCGAGGAAGGTGTTGTTAGAGATGGAGGGCTGTGGTGTTTTGCCTTGTGGGTTTTTGAGTGTGGTGTTTGATGGTCATTCGAATGTGGCAGGTGATCATAGTTTCTTTGATGGAAAAGAAATAATGATTGATGAGCGAACGTATTGTATTTTGTTGAATGGACTTTGCAGGGTTGGAAGGATTGAAAAGGCTGAAGAGGTTCTGGCCAAACTAGTGCATAATGGAGTTACTCCAAGTAGGATTTCATATAACATACTGGTGAATGCATATTGCGAAGACGGTGACGTGAAGAAAGCTACACTGGCAATTGAAGAAATGGAGGAGCGAGGGCTGCAGCCTAACCGCATAACTTTTAATACCCTTATTAGCAAGTTCTGCGAAACTGGGGAGGTGGACCAGGCAGAGACGTGGGTTAAGAGGATGATAGAGAAGGATGTTTCCCCCACTGTGGAGACTTATAACTCGTTGATTCATGGTTATGGTCAGAGGGGCCGTTTTGTCAGGTCTTTCGAGATTCTCGAGGAAATGGAGAAGGCGGGGATAAAGCCTAATGTCATCAGCTATGGTTCTCTAATAAATTGTCTTTGCAAAGATCGCAAGCTTCTTGATGCTGAGATTGTGCTTGCGGATATGATAGGTCGCGGGGTTTCTCCGAATGCAGAAATATATAATATGCTCATTGAAGCCAGTTTTGCACTAAGTAAATTGAAAGATGCTTTCAGATTTTTTGATGAAATGGTGCAAGGTGGAATAGATGCAACTCTTGTGACATACAATACGATGATAAATGGACTCGGAAGAAATGAAAGGGTGAAGGAAGCTGAGGATTTGGCTCTCCAAATGGTAGGCAAGGGCTGTAATCCAGATGTAGTAACATACAATTCTCTGATCTCAGGATATGCCAAGTCAGTAAACACCCAGAAATGTATTGAATTGTATGATAAGATGAAGATGGTAGGCATAAAGCCTACAATTGGGACTTTTCATCCTTTGATCTATGCATGCAGGAAGGTAGGCTTGGCGGAAGTGGAGAGAATGTTTCAGGAAATGCTACAAATGGATTTGATTCCCGATAGATTTGTATATAATGAAATGATTTACAGTTATGCTGAATATGGAAATGTTCTGAAGGCAGTGTCTTTGCACCAACAGATGCTTGATCAGGGAGTTGATTCGGACAAGGTGACTTACAATTGCTTGATTCTAGCATATCTTAGAGATAGAAGGGTTTCAGAAATAAAGCATATTGTTGATGATATGAAGGCTAAAGGACTGGTTCCAAAAGCTGATACATATAACATTCTGGTTAAGGGACATTGTGACTTAAAAGATTTCAATGGTGCATACTTTTGGTATAGGGAAATGACTGACGGGGATTTGCTTTTAAATGCCCGCATGTGCTCCCTGCTAATTTCCGGTCTAAGAGAGGAGGGAATGCTGCTGGAGGCCCAAATTGTATCCTCAGAATTGAGTAGTAGGACTGAATAA 2331 0.4346 MMVFGTRSALRLPPKSHLNNFSSFFCSQSLTLCESDPKYQHRLKKVQKLEDLLNRGRTITARRFLKSLFLSKTTFSSLCELHAHVSKPLFSDTLLWLCSVSKMLNEATDLYFSMRKDGFLPSTRSVNRLLRTLVASRHFEKTLSVFADVVDSDIQPDVITYGKAVQAAVMLKDLDKGFDLVSSMEKEGLGPYVFAYNLILGGLCKVRRIKDARKLFDEMIRRNIAPNTVTYNTLIDGYCKVGELEEAFSFKERMKELNVECNLVTYNCLLSGLCGSGRVEEARKVLLEMEGCGVLPCGFLSVVFDGHSNVAGDHSFFDGKEIMIDERTYCILLNGLCRVGRIEKAEEVLAKLVHNGVTPSRISYNILVNAYCEDGDVKKATLAIEEMEERGLQPNRITFNTLISKFCETGEVDQAETWVKRMIEKDVSPTVETYNSLIHGYGQRGRFVRSFEILEEMEKAGIKPNVISYGSLINCLCKDRKLLDAEIVLADMIGRGVSPNAEIYNMLIEASFALSKLKDAFRFFDEMVQGGIDATLVTYNTMINGLGRNERVKEAEDLALQMVGKGCNPDVVTYNSLISGYAKSVNTQKCIELYDKMKMVGIKPTIGTFHPLIYACRKVGLAEVERMFQEMLQMDLIPDRFVYNEMIYSYAEYGNVLKAVSLHQQMLDQGVDSDKVTYNCLILAYLRDRRVSEIKHIVDDMKAKGLVPKADTYNILVKGHCDLKDFNGAYFWYREMTDGDLLLNARMCSLLISGLREEGMLLEAQIVSSELSSRTE* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1925 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 674 708 IPR002885 -
Pvu1g1925 776 Pfam PPR repeat 322 350 IPR002885 -
Pvu1g1925 776 Pfam PPR repeat 495 528 IPR002885 -
Pvu1g1925 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Pvu1g1925 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
Pvu1g1925 776 Gene3D Tetratricopeptide repeat domain 416 515 IPR011990 GO:0005515
Pvu1g1925 776 Gene3D Tetratricopeptide repeat domain 73 219 IPR011990 GO:0005515
Pvu1g1925 776 Gene3D Tetratricopeptide repeat domain 622 775 IPR011990 GO:0005515
Pvu1g1925 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Pvu1g1925 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Pvu1g1925 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Pvu1g1925 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Pvu1g1925 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Pvu1g1925 776 Gene3D Tetratricopeptide repeat domain 516 621 IPR011990 GO:0005515
Pvu1g1925 776 Gene3D Tetratricopeptide repeat domain 314 415 IPR011990 GO:0005515
Pvu1g1925 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Pvu1g1925 776 Pfam PPR repeat 642 671 IPR002885 -
Pvu1g1925 776 Pfam Pentatricopeptide repeat domain 144 201 IPR002885 -
Pvu1g1925 776 TIGRFAM PPR: pentatricopeptide repeat domain 467 501 IPR002885 -
Pvu1g1925 776 TIGRFAM PPR: pentatricopeptide repeat domain 537 571 IPR002885 -
Pvu1g1925 776 TIGRFAM PPR: pentatricopeptide repeat domain 229 262 IPR002885 -
Pvu1g1925 776 TIGRFAM PPR: pentatricopeptide repeat domain 195 228 IPR002885 -
Pvu1g1925 776 TIGRFAM PPR: pentatricopeptide repeat domain 264 296 IPR002885 -
Pvu1g1925 776 TIGRFAM PPR: pentatricopeptide repeat domain 642 671 IPR002885 -
Pvu1g1925 776 TIGRFAM PPR: pentatricopeptide repeat domain 397 431 IPR002885 -
Pvu1g1925 776 TIGRFAM PPR: pentatricopeptide repeat domain 572 605 IPR002885 -
Pvu1g1925 776 TIGRFAM PPR: pentatricopeptide repeat domain 433 466 IPR002885 -
Pvu1g1925 776 TIGRFAM PPR: pentatricopeptide repeat domain 712 743 IPR002885 -
Pvu1g1925 776 TIGRFAM PPR: pentatricopeptide repeat domain 676 708 IPR002885 -
Pvu1g1925 776 TIGRFAM PPR: pentatricopeptide repeat domain 362 395 IPR002885 -
Pvu1g1925 776 TIGRFAM PPR: pentatricopeptide repeat domain 328 360 IPR002885 -
Pvu1g1925 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Pvu1g1925 776 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 20 771 - -
Pvu1g1925 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 673 IPR002885 -
Pvu1g1925 776 Gene3D Tetratricopeptide repeat domain 220 294 IPR011990 GO:0005515
Pvu1g1925 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Pvu1g1925 776 PANTHER ATPASE EXPRESSION PROTEIN 3 20 771 - -
Pvu1g1925 776 Pfam PPR repeat family 360 407 IPR002885 -
Pvu1g1925 776 Pfam PPR repeat family 536 583 IPR002885 -
Pvu1g1925 776 Pfam PPR repeat family 674 721 IPR002885 -
Pvu1g1925 776 Pfam PPR repeat family 226 274 IPR002885 -
Pvu1g1925 776 Pfam PPR repeat family 429 478 IPR002885 -
Pvu1g1925 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Pvu1g1925 776 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Pvu1g1925 776 SUPERFAMILY TPR-like 194 426 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1925 328 771 Glycosyltransferase AT1G05670 28.764 1.90e-67 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1925 - - gmx:100786292 1298.88