Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1910 ATGGAGAGTGGAAATTGCAGTTGCAACACAAGATATGGTATTGCTACCGGTGGGGATAGGTGGCACCCAAGCCTCCATTGCAAATCCTTCAAGTCTTCTTCCCTTTCCCTCAAACCACCATCCTCCAAACCTTTTTCCCTCTCTTTCCGCCGCAACCTCCGCCATGTCACACACTACCTACCGCCGGACTCCGACTCCCTCGTCCACGCACTCCACGTCTCCTCCCGCGCTGCCGACACCCAACTCGTCAAGACCGTTCACGCCACGCTGCTTAAACTCCACGAACACGACACACGCCTTTTCAACGCCCTCATCTCCGCTTACCTCAAACTCCGCCTCTTCCCTCACGCGCTACGTCTCTTCCTCTCCCTCCCTTCACCCAACGCCGTCTCATACACCACCCTCATCTCCGCCCTATCCAAGCGGCCCCACCACGAGCGCCATGCGCTCAAGCTCTTCCTCCGAATGACGCGCTCCCACCTCATCCCCAACTCGTACACATACGTCGCCGTTTTAACTGCCTGCACAAGAATCCTCCACTTCCAGTTGGGCCTCCAGGTCCACGCTGCCGCTCTCAAAACGGCTCATTTCGATTCCACCTTCGTCGCAAACGCCCTCGTCTCTCTCTACGCCAAACACGCCCCTTTCCACGTTGCGCTTAAACTCTTCAACCAAACACGCCAGAGGGACCTTGCTTCGTGGAACACTATTATCTCTGCTGCGGTGCAGGAATCCATGTACGACACTGCGTTTCAGTTATTCCATGACATGCAGACGACGGATGCGTTTCAAGTCGATGATTTCACCTTGTCGATACTTCTGTCTGCGTGTGCGTCTTTTGTGGAAGGTCAGCAAGTTCACGCGCACGCTGTTAAATTAGGGTTGGAAACTAGTTTGAACGTTGGGAATGGACTCACTGGGTTTTATACTAACTTTGGAACCCTTGAGGATGTGGAGTGGTTGTTTGAGGAGATGAAAGTGAGGGATGTTATAACTTGGACTCAGATGGTGACCGTGTATATGGAGTTTGGGTTGGTGGATTTGGCTCTGAAGGTGTTTGATGAAATGCCCGAGAAGAATTCTGTGTCTTATAACACCGTTTTGTCTGGATTTTGTCAAAACGAGGAAGGCTTAGAGGCGCTGAAGTTGTTCGTCAAAATGGTGGAGGAGGGTTTGGAGTTGACGGATTTTAGTTTGACTAGTGGAGTAAATGCTAGTGGACTGCTTGGTGATCCCAGGGTCAGCAAGCAGGTTCATGGGTTTACCGTGAAGTTTGGGTTTGGATCAAATGCCTGTATTGAAGCGGCATTGCTTGACATGTACACGAGGTGTGGGAGCATGGTGGATGCGGAGAAGATGTTTCTGAGATGGGAGGTGGAGCAGTTTAGCTCTGTGTCTTGGACAGCCATGATATGTGGCTATGCTCGAAACGGGCGGCCAGAGGAGGCCATTTCTCTTTTCCACGTTGGTCGATCGAATGAAAAGGTGATTATGGATGAAGTTGTGGTGACTTCGATGCTTGGTATTTGTGGAACTGTTGGCCATCATGATATGGGTAAACAAATTCACGGTCATGTTGTTAAATGTGGCTTGGGATCTAATTTGCAAGTCGGAAATGCACTTCTTAGCATGTATTTTAAGTGTGGGAACGTGGATGATGCGATGAAGTTGTTTCATGATATGGCTTATACAGATATAGTTACATGGAATACTTTAATCTCGGGAAATCTTATACACAGACAGGGGAACAGAGCATTGGAAGTATGGGTGGAAATGCAAGAGAAGAACATAAAGCCTGACCAAGTTACATTTGTTTTGATAATTTCAGCTTACAGGCAAACTAACTCAAATTTCGTTGATGATTGTCGTAGTTTGTTTAACTCGATGAGAACTGTTTATCAAGTTGAGCCCACATCCTTGCATTATGCTTCCTTCATCAGTGTTTTGGGTCACTGGGGTTTTCTGCAAGAAGCATTAGAAACTATCAATAAAATGCCTTTCCAGCCTTCTGCTCTTGTTTGGCGCGCTTTGCTGGACGCTTGCAAACAGCATCAGAATAATATCATTGGAAGATGGGCTGCTCAGAATATTCTTTCCTTCGAACCTAAAGATCCTTCAACGTTTATACTTGTTTCAAATCTGTATTCTGCTTCTGGGAGATGGGACCGCTCCGAAATGGTCAGGGACGAGATGAGACAAAAGGGGATTCGCAAACACCCAGCTCAAAGTTGGATCATTTCTGAGAAGAAAATACATACATTTTATCCGAGAGATAGATCACATCCTCGGGAGAAAGACATATACAGTGGTTTGGAAATTCTGATCTTGGAGTGCCTAAAAGTTGGATATGAACCTGACACAAGCTTTGTTCTCCATGAAGTAGAGGAGCATCACAAGGAAATTTTTCTATTCCATCACAGTGCTAAACTGGCAGCAACTTACGGGATACTGATGACCAAGCCTGGAAAGCCCGTTCGAATTGTAAAGAACATCCTTCTTTGTGGGGACTGCCATACATTTTTAAAATATGCATCAATTGTCACGAAAAAAGATATATTTCTGAGAGATTCTTCTGGATTTCATTGTTTCTCCGGTGGCCAGTGCTCGTGTAAAGACTGCTGGTGA 2625 0.469 MESGNCSCNTRYGIATGGDRWHPSLHCKSFKSSSLSLKPPSSKPFSLSFRRNLRHVTHYLPPDSDSLVHALHVSSRAADTQLVKTVHATLLKLHEHDTRLFNALISAYLKLRLFPHALRLFLSLPSPNAVSYTTLISALSKRPHHERHALKLFLRMTRSHLIPNSYTYVAVLTACTRILHFQLGLQVHAAALKTAHFDSTFVANALVSLYAKHAPFHVALKLFNQTRQRDLASWNTIISAAVQESMYDTAFQLFHDMQTTDAFQVDDFTLSILLSACASFVEGQQVHAHAVKLGLETSLNVGNGLTGFYTNFGTLEDVEWLFEEMKVRDVITWTQMVTVYMEFGLVDLALKVFDEMPEKNSVSYNTVLSGFCQNEEGLEALKLFVKMVEEGLELTDFSLTSGVNASGLLGDPRVSKQVHGFTVKFGFGSNACIEAALLDMYTRCGSMVDAEKMFLRWEVEQFSSVSWTAMICGYARNGRPEEAISLFHVGRSNEKVIMDEVVVTSMLGICGTVGHHDMGKQIHGHVVKCGLGSNLQVGNALLSMYFKCGNVDDAMKLFHDMAYTDIVTWNTLISGNLIHRQGNRALEVWVEMQEKNIKPDQVTFVLIISAYRQTNSNFVDDCRSLFNSMRTVYQVEPTSLHYASFISVLGHWGFLQEALETINKMPFQPSALVWRALLDACKQHQNNIIGRWAAQNILSFEPKDPSTFILVSNLYSASGRWDRSEMVRDEMRQKGIRKHPAQSWIISEKKIHTFYPRDRSHPREKDIYSGLEILILECLKVGYEPDTSFVLHEVEEHHKEIFLFHHSAKLAATYGILMTKPGKPVRIVKNILLCGDCHTFLKYASIVTKKDIFLRDSSGFHCFSGGQCSCKDCW* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1910 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Pvu1g1910 874 Gene3D Tetratricopeptide repeat domain 516 615 IPR011990 GO:0005515
Pvu1g1910 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 704 738 IPR002885 -
Pvu1g1910 874 TIGRFAM PPR: pentatricopeptide repeat domain 233 259 IPR002885 -
Pvu1g1910 874 TIGRFAM PPR: pentatricopeptide repeat domain 539 561 IPR002885 -
Pvu1g1910 874 TIGRFAM PPR: pentatricopeptide repeat domain 331 360 IPR002885 -
Pvu1g1910 874 TIGRFAM PPR: pentatricopeptide repeat domain 362 395 IPR002885 -
Pvu1g1910 874 TIGRFAM PPR: pentatricopeptide repeat domain 465 488 IPR002885 -
Pvu1g1910 874 TIGRFAM PPR: pentatricopeptide repeat domain 567 600 IPR002885 -
Pvu1g1910 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 163 IPR002885 -
Pvu1g1910 874 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 860 - -
Pvu1g1910 874 Pfam PPR repeat family 565 611 IPR002885 -
Pvu1g1910 874 Pfam PPR repeat family 359 400 IPR002885 -
Pvu1g1910 874 Pfam PPR repeat family 127 175 IPR002885 -
Pvu1g1910 874 Pfam PPR repeat family 230 278 IPR002885 -
Pvu1g1910 874 Pfam E motif 684 745 IPR046848 -
Pvu1g1910 874 Pfam DYW family of nucleic acid deaminases 782 874 IPR032867 GO:0008270
Pvu1g1910 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Pvu1g1910 874 Gene3D Tetratricopeptide repeat domain 415 515 IPR011990 GO:0005515
Pvu1g1910 874 Gene3D Tetratricopeptide repeat domain 616 753 IPR011990 GO:0005515
Pvu1g1910 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Pvu1g1910 874 Gene3D Tetratricopeptide repeat domain 288 414 IPR011990 GO:0005515
Pvu1g1910 874 Gene3D Tetratricopeptide repeat domain 50 180 IPR011990 GO:0005515
Pvu1g1910 874 Gene3D Tetratricopeptide repeat domain 181 287 IPR011990 GO:0005515
Pvu1g1910 874 Pfam PPR repeat 642 665 IPR002885 -
Pvu1g1910 874 Pfam PPR repeat 539 561 IPR002885 -
Pvu1g1910 874 Pfam PPR repeat 465 488 IPR002885 -
Pvu1g1910 874 Pfam PPR repeat 101 122 IPR002885 -
Pvu1g1910 874 PANTHER OS07G0172600 PROTEIN 38 860 - -
Pvu1g1910 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Pvu1g1910 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 359 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1910 Pvu-Chr1 44950403 44953431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1910 61 874 Glycoside Hydrolase AT3G49170 33.896 4.19e-148 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1910 - - gmx:100784704 1405.19