Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1909 ATGGACGCACCTCGTAAGCAGCAGGTGTCGTTGAGAGGAGCAAGTGCGAAGGAGATAACGCGAGACGCCCTTCTTCAGAAGGTCTCTCAGGAAAGAGAACTTCGCAATTATGCAAAACGAGCTGCTGCTGCTGCTCTCTTCATTCAGAGAGTATGGAGGCGCTTCAAGGTCACAAAGACAGTTTCTCTGCAACTTCAGCAAGAGTGGGAGATGGCAGTGAATCATTATACTGGTCTGATGACAGCAAATTGGATTTCAAACAATTTGTTGAGACCATTTCTGTTCTTCATTACCCGTATCTCCACTCAACATGAAAAGGTCCACTGCAAGAGAATAGATTCTATGAAACTGTGCTTTACAATTGTACTGGAAAGCCTGAAATCTTCTGATTCAAAGCTGAACTTTTGCTTTCTGGCAATTGGTACAACTGAAGAAAGAAGAATGTGGAGATACCAGGCACGCAAGCTGACTTCTCTTAGTTTTCTTATTCTTTCAGAGTTCAGTGAATGTCCTTCGGGGGCCCAAGATATTACTATTGTTACATCTCTATCTATGCGTGTTCTTGTAATGTTAACTGATCTGAAAGGATGGAAAGGAATTACAAATAACAACCACTTTGATGCAGATTTAGCAGTGAAAGATTTAATTCAGTTCATGGGCAGTGATAAAAGTGGTTGTTATGTGTCTATTGGCAGATATATTAGTGCATTAGAAAATCATTCTTCTCAGTCAAAGACCATCACCCAGGCAGATGAAATTTTTTTCGTTACTGCAAGTGCAATAACTTTAGCTGTACGGCCTTTTTATCTGACAAACTATGATGCAGAAGCGCCTCATATGCTGGATTTCAACAATGCTGCTGAGCAGTATATTGTTTCTCTGCTGACTATACCTTGGCTAGTGCAACGTCTCCCCCTTGTTCTTCTACCAGCCTTAAAGCACAAATCTATTTTGTTTCCATGCTTCCAGACTCTATTGATTTTGAAAGAGAAAGTTTTGATGGAGATGTCAGGGTTCATCAAATCAGAGATTCCTGTCTCTTTCAAGGCTATTCCACCAGTTGGTTGGGCCCTCGCTAACATCATCTGCTTAGCAACAGTGAATGAGAATGAATCCTTCAATCAAGGTTTAGACCATGGATTGTATGTCCATGTTGTTATTACTCTATCAGAGGCTCTGCTGGCTTGTCTTGATAATATTGGATGGGTCAGAAAGAAAAAGAAAGCCCTTCAAACTGATGTTGAAAATTCAACACAGCCAATTGATGCAGTTCAGCACGAGGGTGAAGCAACCGATGAATCCTTAATATTGTCATACATGGATCAATTTAGGCCTGTTTGTCAGCAGTGGCATCTCAAAATTCTTTTGGCATCAATTGATAGAGATTCCAATAACAAGGCTGCGACTGTGCTCTCAAGTAGCCTGGAATGTCTGGGAAACCTTGAATTGTGTGATATTGCACTTTTTTATTCTAACTTACTTAGAATATTTTCAGTCTTGAGTCCAATTCGTGGCTCATTATCAGTTCTCAACATGCTATCATTCACTCCTGGATTTCTTGTGAGATTGTGGAGTGTACTGGAGGGTTCCTTTTTTTCTGGAGACAAACATAATTCTGATAATTACACAAGTGAAAACAGCAAACATAAAGTCTTTGAGAAGATGCAAAAACAAGTCAGTAAAGATGGACCTAATAAGTGGGTCAATGTACTTCATAGATTTACGGGTAAGACACAAGCAGCAACAGATTGTACTAATTTTATTGACAATCACACTGAGTCTAGCAGAGTGAATGAGGATTCATCAGACGTATGGGACATAGAACCTATGAGGAATGGGCCGCAAGGCATTCCAAAGAATATGTTTTCTATGCTTCATCTTTTCTGTGCGACCTATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGGTTCCATTCCAAATAGAGCAGCAAAGAAGAATAGCGTCTATGCTCAATACCTTGGTTTATAATGGCTTGTCCCATGTTGGTGGTCATCATAATAAGCCCCTAATGGACTGTGCTGTCAGATGCTTACATTTACTGTATGAAAGGGATTGCAGACACCCATTTTGTCCTCCTGCTTTGTGGCTTTCTCCTGCTAGAAAAAGCCGGCCACCAATTGCTGTTGCTGCCAGAACTCATGAAGCTTTAGCAGCCAACCTGAGATATGATGATTCATCCGCTTCGCTGAGTGCTGGTTCTGTTGTCACTATTGTTCCTCACGTTTTCCCTTTTGAGGAGAGAGTTGAGATGTTTCGTGAATTCATCAAGATGGATAAAGCATCTCGAAAAATGGCTGGTGAAATTTCTGAACCTGATTCACGAGCCATTGAGATTGTAGTACGCCGGGGGCATATTGTTGAAGATGGATTTCGGCAATTAAATTCCCTTGGGTCAAGGTTGAAGTCATCCATCCATGTATCATTTGTTAGTGAATGCGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGATTATCTAAAGAGTTTCTAACTGACTTGTCAAAAGCAGCATTTGCTCCTGAATATGGTCTCTTTTCCCAAACCTCAACTTCAGACAGGCTTCTAATTCCAACTGCATCTGCCAGATATTTGGAGAATGGTCTTCAGATGATTGAATTCCTTGGAAGAGTAGTCGGTAAAGCTCTATATGAAGGGATATTACTTGATTACTCTTTCTCCCATGTTTTTGTACAAAAGCTTTTGGGACGATATAGTTTTCTTGTTGAATTATCAACACTTGATCCAGAGTTATACAGAAATCTTATGTATGTCAAGAATTATGATGGTGATGTCATGGAGCTCTGTCTTGATTTCACAGTTACTGAAGAATCATTGGGCAAAAGGTATGTGGTTGAACTGAAGTCTGGTGGCAAAGATATTTCTGTGACGAATGAGAACAAGATGCAGTACATGCATGCAATGGCAGACTACAAACTCAACCAACAGATGTTGCCTTTTTCAAATGCATTTTATAGAGGGTTAACTGATCTTATATCTCCATCCTGGTTGAAGTTATTCAATGCTAGTGAATTTAATCAGTTGCTTTCAGGTGGAAATTATGATATTGATGTTGATGATTTAAAAAATAACACTCGTTACACTGGTGGTTACAACGAGGGAAGCCGGACAATCAAGATTTTTTGGGAGGTAATTAAAGGCTTTGAACCTGAAGAGCGTTGTATGCTTCTTAAATTTGTCACTAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCACCACTAACCATCCACAAGGTTGCTTGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACTCTCAAGCTTCCAACATACAAACGTCCAGGCACCTTGAGGGCAAAGCTTCTCTATGCTATCAGTTCAAATGCGGGATTTGAACTTTCTTGA 3474 0.4047 MDAPRKQQVSLRGASAKEITRDALLQKVSQERELRNYAKRAAAAALFIQRVWRRFKVTKTVSLQLQQEWEMAVNHYTGLMTANWISNNLLRPFLFFITRISTQHEKVHCKRIDSMKLCFTIVLESLKSSDSKLNFCFLAIGTTEERRMWRYQARKLTSLSFLILSEFSECPSGAQDITIVTSLSMRVLVMLTDLKGWKGITNNNHFDADLAVKDLIQFMGSDKSGCYVSIGRYISALENHSSQSKTITQADEIFFVTASAITLAVRPFYLTNYDAEAPHMLDFNNAAEQYIVSLLTIPWLVQRLPLVLLPALKHKSILFPCFQTLLILKEKVLMEMSGFIKSEIPVSFKAIPPVGWALANIICLATVNENESFNQGLDHGLYVHVVITLSEALLACLDNIGWVRKKKKALQTDVENSTQPIDAVQHEGEATDESLILSYMDQFRPVCQQWHLKILLASIDRDSNNKAATVLSSSLECLGNLELCDIALFYSNLLRIFSVLSPIRGSLSVLNMLSFTPGFLVRLWSVLEGSFFSGDKHNSDNYTSENSKHKVFEKMQKQVSKDGPNKWVNVLHRFTGKTQAATDCTNFIDNHTESSRVNEDSSDVWDIEPMRNGPQGIPKNMFSMLHLFCATYSHLLLVLDDIEFYEKQVPFQIEQQRRIASMLNTLVYNGLSHVGGHHNKPLMDCAVRCLHLLYERDCRHPFCPPALWLSPARKSRPPIAVAARTHEALAANLRYDDSSASLSAGSVVTIVPHVFPFEERVEMFREFIKMDKASRKMAGEISEPDSRAIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLLEAGLDYGGLSKEFLTDLSKAAFAPEYGLFSQTSTSDRLLIPTASARYLENGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLVELSTLDPELYRNLMYVKNYDGDVMELCLDFTVTEESLGKRYVVELKSGGKDISVTNENKMQYMHAMADYKLNQQMLPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNYDIDVDDLKNNTRYTGGYNEGSRTIKIFWEVIKGFEPEERCMLLKFVTSCSRAPLLGFKYLQPPLTIHKVACDVPLWATIGGQDVDRLPSASTCYNTLKLPTYKRPGTLRAKLLYAISSNAGFELS* 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1909 1157 Gene3D Hect, E3 ligase catalytic domains 791 1029 - -
Pvu1g1909 1157 SUPERFAMILY Hect, E3 ligase catalytic domain 789 1150 IPR035983 GO:0004842
Pvu1g1909 1157 Gene3D Hect, E3 ligase catalytic domain 915 994 - -
Pvu1g1909 1157 CDD HECTc 789 1155 IPR000569 GO:0004842
Pvu1g1909 1157 Gene3D Hect, E3 ligase catalytic domain 1032 1156 - -
Pvu1g1909 1157 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1157 - -
Pvu1g1909 1157 ProSiteProfiles HECT domain profile. 813 1157 IPR000569 GO:0004842
Pvu1g1909 1157 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1157 IPR044611 GO:0000209|GO:0061630
Pvu1g1909 1157 Pfam HECT-domain (ubiquitin-transferase) 844 1157 IPR000569 GO:0004842
Pvu1g1909 1157 SMART hect_3 807 1157 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1909 Pvu-Chr1 44939299 44949995 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1909 K10588 - gmx:100527169 2071.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1909 1 44939299 44949995 Pvu1g1909 1 44939299 44949995 ECH