Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1880 ATGGTGAAGGCCTACCTCCGATACGAGCCGGCGGCGTCGTTTGGGGTGATAGCCTCAGTGGATTCCAACATATCATACGACAGCTCTGGCAAGCACCTCCTCTCTCCGGCGTTAGAGAAGATCGGCGTCTGGCACGTGCGGCAGGGCCTCTGCTCAAAAACCCTAACACCTTCCACTGCGTCGCCCGGTCCTTCCCTCGCCGTCACCTCCATTGCTTCCTCCTCTTCTTCATTGATTGCTGGTGGTTACGGGGATGGTAGCATACGGATTTGGGACTCTGACAAAGGAACGTGTGAGACTACGCTAAATGGACACAAGGGAGCTGTCACCGCTCTTCGTTACAACAAGGCTGGTTCCTTGCTGGCCTCTGGTAGCAAGGACAATGATGTTATTTTATGGGACGTGGTTGGCGAGACTGGGCTCTTTCGCCTTCGCGGTCATCGTGACCAGGTGACTGATGTCGTTTTTTTGAATTCTGGGAAAAAACTTGTTAGTTCCTCCAAAGACAAGTTCTTGAGAGTGTGGGATCTTGATACCCAGCACTGTATGCAAATTGTGGGTGGACATCATAGTGAAATATGGTCCCTAGATGTTGATCTGGATGAAAGGTATCTGGTCACTGGTTCTGCAGATAATGAACTTCGTTTTTATGTAATCAGACATGAGTCTGTGGATGGGGAGTCTGGAAAGGGTGGTGAAGAATCTTCCATTCAAAGCAAATGGGAAGTGTTGAGGCATTTTGGTGAAATTCAGCGACAAAGTAAGGATAGGGTTGCAACGGTGCAGTTCAACAAGTCAGGAAATCTGCTAGCTTGCCAAGTTGCTGGAAAGACAGTAGAAATATATCGTGTATTGGATGATGCTGAAGCAAAGCGCAAGGCAAAACGAAGGGGTCACCGAAAGAAAGAGAAGAAACACAGTAAAGAGGTTTCGGAGGTAGTAGAAAATGGGGACGGGAATAATGTTAACAAAGGAGATAATTCTTCTGTCACTCATGCGGTCACAGAAACAACTAATCCTTCAGTTACTGTGCCTGATGTTTTTAAGCTGTTGCATACTATTAGAGCTAACAAAAAGATATGCTCCATTTCTTTCTGTCCAACCACTCCAAAAAATTCATTGGCTAGTTTAGCATTGTCTCTGAACAATAATCTTCTTGAGGTTTATTCCATTGAACTTGGTGAATCCAAAAAAACACTTGCTATTGATCTTCAGGGGCATCGTTCTGATGTTAGAAGTGTCACGCTTAGTTCAGACAACACTTTTCTGATGTCAACCAGTCACAATGCAGTAAAAATTTGGAACCCAATTACTGGCTCTTGCCTAAGGACCATTGATTCTGGATATGGACTTTGCAGTTTAATTCTTCCCACTAACAAGTATGGAGTTGTTGGAACTAAAGATGGAACCATAGAAATTATTGATATTGGAAGTGGCACTTGTGTTGAAGTAATGGAAGCTCATGGTGGTTCTGTTCGCTCAATTACTGCCCTACCTCATAAAAATGGTTTTGTCACAGGAAGTGCTGATCATGATGTCAAATTTTGGGAGTACCAATTTAAGCAAAAACCTGGTCAAGCTACTAAGCAACTTGTAGTGTCAAATGTCAGTACCATGAAAATGAATGATGACGCTCTTGTGGTTGCAATTAGCCCTGATGCTAAATATATTGCTGTTGCTCTATTGGATAGTACTGTGAAGGTTCACTTTGCAGACACATTCAAATTTTTCCTTTCATTATATGGCCACAAGCTGCCTGTTCTGTGTATGGATATCTCATCAGATGGAGATTTAATTGTGACTGGCTCTGCAGATAAAAATTTAAAGATTTGGGGTTTAGACTTCGGTGACTGTCATAAATCCATTTTTGCTCATTCTGACAGTGTTATGGCAGTACAATTTGTTCCCAGGACACATTATGTGTTCAGTGTTGGAAAAGATCGCCTAGTAAAATACTGGGATGCTGATAAATTTGAGCTGCTGTTGACTCTAGAAGGACATCATGCTGATATTTGGTGTCTTGCAGTCAGTAATCGAGGGGATTTCATCGTCACTGGATCTCATGATCGTTCTATCCGTCGTTGGGATCGCTCTGAAGAGCAGTTTTTCATTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATATTGACAATGCATTTGAAAACAAGCATGCATCAAAGGAAGAAATACCAGAGGAGGGAGCTGTGGCTTTAGCTGGGAAACAAACCCAGGAAACCCTTACTGCAACTGACTTGATTATTGAAAGATTAGACATCGCAGAAGCTGAAGACAAGCGTATTGCAGAACATCAGGAGGAGAAAAATAACAAAAATGTTGCTGTTTTCCAATCAAATCCGCTTATGAATGGGCTTTCACCTTCTGATTATGTTTTGAGTGCATTTTCAAATGTTCACTCCAACGATTTGGAGCAAACATTACTGGCTTTACCATTTTCAGATGCTTTGAAGCTTCTCTCGTACTTGAAAGACTGGACTTCATATTCTGATAAGGTTGAGCTTGTTTGCAGAATAGGTACGCTGCTGTTGCAGACACATTACAACCAGCTTCTTGCCACACCAGCTGCCCGACCTATCTTGACTGTTTTCAGTGACATTTTTTATGAAAGGGTCAAGGGATGGAAAGATATCTTTGGTTTTAACCTCGCAGCCATGGATCATATTCAGCAATTGATGGCATCAAGATCGGATGCTCTTTTTCATGATGCAAAATCAAAACTGCTAGAGATACGAGCTCGACAATCCAAACGTTTAGAAGAAAGGTCACAAACCGGAGAAGTGAAGCGGAAGAAGAAAAAGACATAA 2835 0.4265 MVKAYLRYEPAASFGVIASVDSNISYDSSGKHLLSPALEKIGVWHVRQGLCSKTLTPSTASPGPSLAVTSIASSSSSLIAGGYGDGSIRIWDSDKGTCETTLNGHKGAVTALRYNKAGSLLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDVVFLNSGKKLVSSSKDKFLRVWDLDTQHCMQIVGGHHSEIWSLDVDLDERYLVTGSADNELRFYVIRHESVDGESGKGGEESSIQSKWEVLRHFGEIQRQSKDRVATVQFNKSGNLLACQVAGKTVEIYRVLDDAEAKRKAKRRGHRKKEKKHSKEVSEVVENGDGNNVNKGDNSSVTHAVTETTNPSVTVPDVFKLLHTIRANKKICSISFCPTTPKNSLASLALSLNNNLLEVYSIELGESKKTLAIDLQGHRSDVRSVTLSSDNTFLMSTSHNAVKIWNPITGSCLRTIDSGYGLCSLILPTNKYGVVGTKDGTIEIIDIGSGTCVEVMEAHGGSVRSITALPHKNGFVTGSADHDVKFWEYQFKQKPGQATKQLVVSNVSTMKMNDDALVVAISPDAKYIAVALLDSTVKVHFADTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNLKIWGLDFGDCHKSIFAHSDSVMAVQFVPRTHYVFSVGKDRLVKYWDADKFELLLTLEGHHADIWCLAVSNRGDFIVTGSHDRSIRRWDRSEEQFFIEEEKEKRLEEMFEADIDNAFENKHASKEEIPEEGAVALAGKQTQETLTATDLIIERLDIAEAEDKRIAEHQEEKNNKNVAVFQSNPLMNGLSPSDYVLSAFSNVHSNDLEQTLLALPFSDALKLLSYLKDWTSYSDKVELVCRIGTLLLQTHYNQLLATPAARPILTVFSDIFYERVKGWKDIFGFNLAAMDHIQQLMASRSDALFHDAKSKLLEIRARQSKRLEERSQTGEVKRKKKKT* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 135 - -
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 135 IPR001680 GO:0005515
Pvu1g1880 944 Gene3D - 10 220 IPR015943 GO:0005515
Pvu1g1880 944 Gene3D - 643 713 IPR015943 GO:0005515
Pvu1g1880 944 Gene3D - 227 446 IPR015943 GO:0005515
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 580 614 - -
Pvu1g1880 944 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Pvu1g1880 944 SUPERFAMILY WD40 repeat-like 253 446 IPR036322 GO:0005515
Pvu1g1880 944 MobiDBLite consensus disorder prediction 292 337 - -
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 485 517 - -
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 217 IPR001680 GO:0005515
Pvu1g1880 944 SMART WD40_4 48 92 IPR001680 GO:0005515
Pvu1g1880 944 SMART WD40_4 95 134 IPR001680 GO:0005515
Pvu1g1880 944 SMART WD40_4 615 654 IPR001680 GO:0005515
Pvu1g1880 944 SMART WD40_4 240 283 IPR001680 GO:0005515
Pvu1g1880 944 SMART WD40_4 657 696 IPR001680 GO:0005515
Pvu1g1880 944 SMART WD40_4 137 176 IPR001680 GO:0005515
Pvu1g1880 944 SMART WD40_4 573 612 IPR001680 GO:0005515
Pvu1g1880 944 SMART WD40_4 397 435 IPR001680 GO:0005515
Pvu1g1880 944 SMART WD40_4 179 218 IPR001680 GO:0005515
Pvu1g1880 944 SMART WD40_4 532 570 IPR001680 GO:0005515
Pvu1g1880 944 SMART WD40_4 478 517 IPR001680 GO:0005515
Pvu1g1880 944 SMART WD40_4 438 475 IPR001680 GO:0005515
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 73 101 IPR001680 GO:0005515
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Pvu1g1880 944 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Pvu1g1880 944 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Pvu1g1880 944 PRINTS G protein beta WD-40 repeat signature 599 613 IPR020472 -
Pvu1g1880 944 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 942 - -
Pvu1g1880 944 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Pvu1g1880 944 Pfam WD domain, G-beta repeat 578 611 IPR001680 GO:0005515
Pvu1g1880 944 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Pvu1g1880 944 Pfam WD domain, G-beta repeat 62 92 IPR001680 GO:0005515
Pvu1g1880 944 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Pvu1g1880 944 Pfam WD domain, G-beta repeat 659 696 IPR001680 GO:0005515
Pvu1g1880 944 Pfam WD domain, G-beta repeat 96 134 IPR001680 GO:0005515
Pvu1g1880 944 Pfam WD domain, G-beta repeat 404 435 IPR001680 GO:0005515
Pvu1g1880 944 Pfam WD domain, G-beta repeat 479 516 IPR001680 GO:0005515
Pvu1g1880 944 CDD WD40 404 696 - -
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 664 696 - -
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 404 444 IPR001680 GO:0005515
Pvu1g1880 944 Pfam Dip2/Utp12 Family 799 899 IPR007148 -
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 621 IPR001680 GO:0005515
Pvu1g1880 944 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 69 701 IPR011047 -
Pvu1g1880 944 CDD WD40 98 517 - -
Pvu1g1880 944 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 942 - -
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 622 663 IPR001680 GO:0005515
Pvu1g1880 944 Gene3D - 447 642 IPR015943 GO:0005515
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 622 654 - -
Pvu1g1880 944 MobiDBLite consensus disorder prediction 314 337 - -
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 696 IPR001680 GO:0005515
Pvu1g1880 944 Coils Coil 285 305 - -
Pvu1g1880 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 485 517 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1880 504 696 Miscellaneous Gene Families AT5G08390 26.154 1.66e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1880 K14556 - gmx:100775810 1675.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1880 1 44613093 44622159 Pvu1g1880 1 44613093 44622159 ECH