Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1865 ATGGCGTCTCCGTTTGAATTCACGGACCACGACGAAAACCTAATCGCAACGCGACCACTCATACGAGGACCCGCACATTACGTATTCACCGACGATGAAGACACCGACGACGCAGGCGAAGACGAAGACGAAGACGAAGAAGACGAAGAGTACGTTCCCGGTGTGGCCTCCCCTAGGGCTTCGCACGACACTCCTCGTATCGTTTCATCCAATAACTTAATCGTTATCCCCGACGAATCACAGGATTGCGTTGAAGAGGAAGGAAATAAACGCCGCAGGTACGAAGGAGGCGAGACTTCCTGTTCCTTCGCGATTGGGAGCAGCAACGGTAGCCAAGGAAACGTCCACACCGACATTGATGGTCTCTTTTGCCCTATTTGCATGGATGTTTGGACCAATAACGGCGAACATCATATCTGTTGTCTTCCTTGTGGACACATATATGGCATGTCTTGCATCAAAAAATGGTTTCAACAGCGCAAAAATTCCAGCAAGTGTCCACAATGTAATAGGAAATGTAAGTTGAAGGACGTGAGGAAACTCTTTGCTTCCCGAGTAGTTGCCGTCGAGGAAGAGTCTCAGAAGAGAATTCAGTCACTTGAGGCCAAATGTGCTGCCCTTGAAAGTAAGGCCAGTGATTGGTGCAAGAAAGAAGATGGATGGAAGTATCGAGAAGCCGCCTTGCATGTTGAAGTTCAGAGTCTTACAGAGAGAAACACTTATTTGGAGCAGCTGCTACTAGGTATGCAGAGCAGGCAATCTGCATCGATAAGTGGCAATGGAAACTCTCAGTGGAGAAGTGAATCTGAGCACAACATCGGCCCAAAGTACTGTGGAAAGGGATCCATTTGTAATTTTGAATTGCAGAAAGAGTTTCATCTGGATGGTGGGCGCGTTTTTGATATGGACATCTCTAATCAAATTTTATTAATCGCACAAAAGCCAAAGGAAGTAGGTGGAATGCACTTGCTAACTAAAATGAGCTTGTTGTCTCCATTTGAGACGCAAGATATCTTGCTGCCTTCTGATACATTTGGTGTTAAAGACCTGCATATTTCTCCTTCTAATAGTAGTCTAGCTCTCTTTTCTTCATTAGGAAAGAAACTATCAGTGCTCAGCTTGGACAGTGGCAATCTTGTTATCAATTATGATCTACAGGATCCTGCATGGTCTTGTTCGTGGGATCTCAACAATTCGCATAACATATATGCTGGGCTACAGAATGGTTCTGTCTTAGTGTTTGACATGCGTCAAACTGTAGGCCCCGTGAAATCTTTAGTTGGTTTGACTAACAACCCTGTGCATACCGTCAATTCTCTTGCACAAACTTCAAGTCTTTCTTCTGGTGTTAAAACCATCCTATCGGCATCTGCCTTTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAACGGCCGCTTGTGGTTCCTGAAACTGACAATCAAGGAGTCTGCATATCCCTTGCCTATTGCCCTAGCAGTGATGACATTGTTGCTTCTTACAGACCGATATTCAGTATGTCCATGGATGTGCCTCTATCTCAACCATTGGCCACTCCTCTTAGTGCTGGACAAGGAGTACAGGGCACTCATGTCTTGTTCAATAGAATGGGTGGTCATCATTTCCAAAAGGTGGGTTCCTCATATGCCAATGTGAGTAAAATTCGACTACCAAAATGTGTAATTATGGACATAGAGAATCAGAGCAGATTGTTTGCATCTTGGGATGAAGTTACATGTGATTTGCTCTTGCATGAGTTGCCATCTTTTAGAGTTCTTCAGCAATTCAAAATGCCCGCTCAGGCCCGTGATCTTAGGTACTCACCTAGCCACGGTATACTTGGTTGTTTAAGTGAGAACACGTTGCAGCTTTTCTATTCCAAACACTCGTCGGTAAGGTAA 1899 0.4481 MASPFEFTDHDENLIATRPLIRGPAHYVFTDDEDTDDAGEDEDEDEEDEEYVPGVASPRASHDTPRIVSSNNLIVIPDESQDCVEEEGNKRRRYEGGETSCSFAIGSSNGSQGNVHTDIDGLFCPICMDVWTNNGEHHICCLPCGHIYGMSCIKKWFQQRKNSSKCPQCNRKCKLKDVRKLFASRVVAVEEESQKRIQSLEAKCAALESKASDWCKKEDGWKYREAALHVEVQSLTERNTYLEQLLLGMQSRQSASISGNGNSQWRSESEHNIGPKYCGKGSICNFELQKEFHLDGGRVFDMDISNQILLIAQKPKEVGGMHLLTKMSLLSPFETQDILLPSDTFGVKDLHISPSNSSLALFSSLGKKLSVLSLDSGNLVINYDLQDPAWSCSWDLNNSHNIYAGLQNGSVLVFDMRQTVGPVKSLVGLTNNPVHTVNSLAQTSSLSSGVKTILSASAFGLCQWNIDSEERPLVVPETDNQGVCISLAYCPSSDDIVASYRPIFSMSMDVPLSQPLATPLSAGQGVQGTHVLFNRMGGHHFQKVGSSYANVSKIRLPKCVIMDIENQSRLFASWDEVTCDLLLHELPSFRVLQQFKMPAQARDLRYSPSHGILGCLSENTLQLFYSKHSSVR* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1865 632 MobiDBLite consensus disorder prediction 22 64 - -
Pvu1g1865 632 Pfam Ring finger domain 124 170 IPR001841 -
Pvu1g1865 632 PANTHER RFWD3 PROTEIN 32 624 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Pvu1g1865 632 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 32 624 - -
Pvu1g1865 632 SUPERFAMILY WD40 repeat-like 285 595 IPR036322 GO:0005515
Pvu1g1865 632 CDD mRING-C3HGC3_RFWD3 120 170 - -
Pvu1g1865 632 Coils Coil 190 217 - -
Pvu1g1865 632 MobiDBLite consensus disorder prediction 33 51 - -
Pvu1g1865 632 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 193 IPR013083 -
Pvu1g1865 632 Gene3D - 197 508 IPR015943 GO:0005515
Pvu1g1865 632 SMART ring_2 124 169 IPR001841 -
Pvu1g1865 632 SUPERFAMILY RING/U-box 119 176 - -
Pvu1g1865 632 ProSiteProfiles Zinc finger RING-type profile. 124 170 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1865 K15691 - gmx:100818898 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1865 1 44454849 44460287 Pvu1g1865 1 44454849 44460287 ECH