Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1863 ATGCGTTCAATCTCTCATAACTGGTCTTCTTCTGGTGGTCTTGGTTCAGGCGCGAGCATCACCACCCTTCTGCAGGCGTGCAAGAGCAGTGAACAGCTGGAGCAAGTGCACGCTTCCATCATCTACCGAGGCCTCGAGCAAGACCACTTCCTCATCTCCCTTTTCATTCCCCTATCCCACACCCTCTCCACTCTCTCCTACTCCTCCTCAGTCTTCCTCCGTGTCCTCACCCCTTCCACCTTCCTCTGGAACACTCTCATCAAATCCCATTGCCAAAACAGCTTCTTCTCCCACACCTTCTCGGCCTTCGCTCGCATGAAGGCGCACGGCGCCCTTCCCGACACCTTCACCTACCCTCCTGTCATTAAGGCCTGTTCCACCACGTGCAAACCGCGGGAAGGAAAATCGCTTCATGGGTCCGCGTTCAGGTGTGGACTCCACCGGGATCTCTACGTGGCCACCAGTTTGATCGACATGTATGGCAAATGCGGGCAGATTGCTGATGCTCGCAGGCTGTTTGATGGAATGTCTAATAGGAGTGTCGTTTCCTGGACTGCTATGCTTGTTGGGTATGTTGCTGTTAGGGATGTTGTGGAGGCCGAGAAGCTGTTTGATGAGATGCCGCAGAGAAATGTGGCTTCTTGGAATGCGATGTTGCAGGGTTTTGTCAAGGTGGGGGATTTGGGTAGTGCTAGGGATGTGTTTGACGCTATGCCGGAGAAGAATGCTATTTCTTTCACCACCATGATTGATGGGTATGCCAAGGTGGGTGACATGGTGGCCGCGAGGTTCTTGTTTGATCGTGCTCCAGGAAAGGATGTTGTTGCTTGGTCTGCTTTGATATCGGGTTATGTTCAGAATGGGCAGCCTAACCAGGCGTTGAAAGTGTTTCATGAGATGGAATCGATGAATGTGAAGCCTGATGAGTTCATACTGGTTAGCTTGATGTCGGCGTCAGCGCAGTTGGGGCATTTAGAACTCGCTCAATGGGTTGATTCTTATGTAATGAAGAGCTGTATCGATGTTCAGCAGGACCATGTACTTGCAGCGCTTCTGGATATGAATGCAAAGTGTGGAAACATGGAGAGAGCATCGAAATTGTTTGAGGAAAGACCTAAACGAGATCTAGTCTTGTATTGTTCGATGATACAAGGGTTGTCAATCCATGGGCGTGGGGAAGAGGCCGTGAATCTGTTTAACAGAATGCTGATCGAAGGGCTATCTCCGGATGAGGTGGCCTTCACAGTCATCCTCACAGCCTGTAGTCATGCTGGGCTTGTTGATGAGGGCTGGAAATACTTCCAATCCATGAAGCAAAAATACTACGTTAGTCCTTCGCCTGATCACTATGCGTGTATGGTTGATCTTCTAAGCCGGTCAGGACACACAAGGGATGCTTATGAACTTATAAAATTAATGCCTGAGCCTCATGCTGGTGCCTGGGGTGCACTTCTTGGGGCATGTAAACTATATGGTGATTCAGAGCTGGGAGAGATTGTTGCTAGTCGACTTTTTCAGTTTGAGCCTCTAAATGCAGCTAACTATGTGTTGTTGTCTGACATCTATGCAGCAGCAGAGCGATGGATTGATGTTTCCCTTGTGAGAAGTAAGATGAGAGAAAGGAGAGTGCGGAAGATACCTGGTTACAGTAAAATTTAG 1659 0.4931 MRSISHNWSSSGGLGSGASITTLLQACKSSEQLEQVHASIIYRGLEQDHFLISLFIPLSHTLSTLSYSSSVFLRVLTPSTFLWNTLIKSHCQNSFFSHTFSAFARMKAHGALPDTFTYPPVIKACSTTCKPREGKSLHGSAFRCGLHRDLYVATSLIDMYGKCGQIADARRLFDGMSNRSVVSWTAMLVGYVAVRDVVEAEKLFDEMPQRNVASWNAMLQGFVKVGDLGSARDVFDAMPEKNAISFTTMIDGYAKVGDMVAARFLFDRAPGKDVVAWSALISGYVQNGQPNQALKVFHEMESMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVMKSCIDVQQDHVLAALLDMNAKCGNMERASKLFEERPKRDLVLYCSMIQGLSIHGRGEEAVNLFNRMLIEGLSPDEVAFTVILTACSHAGLVDEGWKYFQSMKQKYYVSPSPDHYACMVDLLSRSGHTRDAYELIKLMPEPHAGAWGALLGACKLYGDSELGEIVASRLFQFEPLNAANYVLLSDIYAAAERWIDVSLVRSKMRERRVRKIPGYSKI* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1863 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Pvu1g1863 552 Gene3D Tetratricopeptide repeat domain 179 234 IPR011990 GO:0005515
Pvu1g1863 552 Gene3D Tetratricopeptide repeat domain 235 346 IPR011990 GO:0005515
Pvu1g1863 552 PANTHER OJ991214_12.4 PROTEIN 18 550 - -
Pvu1g1863 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Pvu1g1863 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Pvu1g1863 552 TIGRFAM PPR: pentatricopeptide repeat domain 182 211 IPR002885 -
Pvu1g1863 552 TIGRFAM PPR: pentatricopeptide repeat domain 154 182 IPR002885 -
Pvu1g1863 552 TIGRFAM PPR: pentatricopeptide repeat domain 275 309 IPR002885 -
Pvu1g1863 552 TIGRFAM PPR: pentatricopeptide repeat domain 244 268 IPR002885 -
Pvu1g1863 552 TIGRFAM PPR: pentatricopeptide repeat domain 82 115 IPR002885 -
Pvu1g1863 552 TIGRFAM PPR: pentatricopeptide repeat domain 214 241 IPR002885 -
Pvu1g1863 552 TIGRFAM PPR: pentatricopeptide repeat domain 412 439 IPR002885 -
Pvu1g1863 552 TIGRFAM PPR: pentatricopeptide repeat domain 377 411 IPR002885 -
Pvu1g1863 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Pvu1g1863 552 Pfam PPR repeat 154 179 IPR002885 -
Pvu1g1863 552 Pfam PPR repeat 450 474 IPR002885 -
Pvu1g1863 552 Pfam PPR repeat 350 370 IPR002885 -
Pvu1g1863 552 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Pvu1g1863 552 Pfam E motif 491 552 IPR046848 -
Pvu1g1863 552 Gene3D Tetratricopeptide repeat domain 6 178 IPR011990 GO:0005515
Pvu1g1863 552 Gene3D Tetratricopeptide repeat domain 347 550 IPR011990 GO:0005515
Pvu1g1863 552 PANTHER OS07G0578800 PROTEIN-RELATED 18 550 IPR045215 GO:0003723|GO:0009451
Pvu1g1863 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Pvu1g1863 552 Pfam PPR repeat family 78 125 IPR002885 -
Pvu1g1863 552 Pfam PPR repeat family 375 422 IPR002885 -
Pvu1g1863 552 Pfam PPR repeat family 210 255 IPR002885 -
Pvu1g1863 552 Pfam PPR repeat family 272 310 IPR002885 -
Pvu1g1863 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1863 Pvu-Chr1 44431488 44436100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1863 21 552 Glycoside Hydrolase AT3G49170 31.892 3.42e-86 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1863 - - var:108322368 983.4