Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1829 ATGATGAACACATCGAACGGCATGATGGCACCGTCGTCTTCGTCGGGAACGGTACAGTCGCCGGGACTCAAAACTTATTTCAAAACTCTTGAAGGAAGATATAAGCTTCAGTACGAGAAGACTCACCCTTCTGGTCTTCTTCATTATGCCCATGGAAAAACCGTTACTCAGGTAACCCTGGCACATCTCAAGGACAAGCCTGCACCTTCTACACCAACTGCGCCGTCTTCAAGTTTCAGTGCAAGCAGTGGGGTACGGTCTGCGGCCGCTCGATTATTGGGAGGAAGCAACGGAAGCCGGGCACTTAGTTTTGTTGGAGGCAACGGTGGCAGCAAGAGTAATGGAGGGAACGGTAGGATTGGTTCCATTGGAGCCTCGAGTACAAGTAATTCAATGGCTAATCCAAATTTTGATGGGAAAGGGACGTATCTGATATTCAACGTCGGTGATGCAATTTTCATTAGCGATTTGAATTCTCAGGACAAGGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCAGTGTGCCATGCGTTTGATCAGGATTCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACTCTGGCGATGTCTACTCAGTGTCACTGAGACAGCAACTACAGGATGTTGGTAAAAAGCTTGTTGGGGCACAGCATTACAACAAAGACGGTTCAGTCAATAACAGTCGTTGTACATGTATTGCTTGGGTGCCTGGAGGTGATGGTGCTTTCGTTGTTTCTCATTCTGATGGTAATTTGTACGTGTATGAGAAGAACAAAGATGGTGCTGGTGATTCTTCTTTTCCAGTTGTAAAAGATCAAACTCAATTTTCTGTTGCCCATGCACGTTACAGTAAGAGTAATCCGATAGCCAGATGGCATATATGTCAGGGTTCAATTAACAGTATTTCCTTCTCAATGGATGGAGCATACCTGGCAACTGGTGGACGAGATGGTTATTTGCGAGTGTTTGATTACTCAAAAGAACACCTTATATGCGGCGGGAAAAGTTATTACGGTGCTTTGTTATGTTGTGCGTGGAGCATGGATGGAAAGTATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACATAATTCATGGGTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCACCAAATTCAAATGACAATGGAGAGACCGTTATGTATCGTTTTGGTTCTGTTGGTCAGGATACACAATTGCTTCTATGGGACCTGGAAATGGACGAGATTGTAGTGCCGTTGAGGCGGCCAGCTGGTGGATCCCCAACTTACAGTACTGGAAGCCAGTCATCACACTGGGACAATATTGTCCCATTGGGTACCTTGCAAGCTGCTCCCAGTATGCGGGATGTTCCAAAAATATCTCCGTTGGTTGCTCACCGTGTGCATACTGAACCACTCTCTGGCTTGATATTTACCCAGGAATCTGTACTTACTGCCTGTCGGGAAGGGCACATTAAAGTCTGGATGAGGCCAGGGGCAGGGGCTGCTTCTGAGACCCAATCAAGCAACTCTGATAACTTGTTAGTAATAGCACCCAGTCTCAAGGAGAAGCCTTCACTCTCAACCAAGATCACTAATTCTGCCTACAAACAATGA 1656 0.4589 MMNTSNGMMAPSSSSGTVQSPGLKTYFKTLEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTAPSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGGNGRIGSIGASSTSNSMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDSKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTCIAWVPGGDGAFVVSHSDGNLYVYEKNKDGAGDSSFPVVKDQTQFSVAHARYSKSNPIARWHICQGSINSISFSMDGAYLATGGRDGYLRVFDYSKEHLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPAGGSPTYSTGSQSSHWDNIVPLGTLQAAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKVWMRPGAGAASETQSSNSDNLLVIAPSLKEKPSLSTKITNSAYKQ* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1829 551 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 377 IPR001680 GO:0005515
Pvu1g1829 551 PANTHER WD REPEAT PROTEIN 3 548 - -
Pvu1g1829 551 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 326 IPR001680 GO:0005515
Pvu1g1829 551 MobiDBLite consensus disorder prediction 107 129 - -
Pvu1g1829 551 SUPERFAMILY WD40 repeat-like 150 508 IPR036322 GO:0005515
Pvu1g1829 551 MobiDBLite consensus disorder prediction 1 22 - -
Pvu1g1829 551 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 3 548 - -
Pvu1g1829 551 SMART WD40_4 329 368 IPR001680 GO:0005515
Pvu1g1829 551 SMART WD40_4 472 509 IPR001680 GO:0005515
Pvu1g1829 551 SMART WD40_4 287 326 IPR001680 GO:0005515
Pvu1g1829 551 SMART WD40_4 212 258 IPR001680 GO:0005515
Pvu1g1829 551 SMART WD40_4 371 423 IPR001680 GO:0005515
Pvu1g1829 551 Pfam WD domain, G-beta repeat 343 368 IPR001680 GO:0005515
Pvu1g1829 551 Pfam WD domain, G-beta repeat 298 326 IPR001680 GO:0005515
Pvu1g1829 551 Gene3D - 12 515 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1829 303 430 Miscellaneous Gene Families AT5G08390 23.438 4.15e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1829 K24741 - gmx:100782580 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1829 1 43992608 43999138 Pvu1g1829 1 43992608 43999138 ECH