Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1803 ATGAGAGATTTCGTGATCCTTGGCTCCTCTGTCGCAACCCCTTTTCCTTCTTCTTCTTCTGCAGCGCCTCATCGCTACCCCATCAAACCCTCTCTTCCAAAGCTCGCTCCTTTCTCTTCTTCTTGGAACATTTCATGCGCCCTCCAAGCCCCCCTCTCTCTCAGCGCAGATTCCAAGCTTGTTGAGGAATTCGAAGTGGTTGATGGAGATGCCATTGATTCTGGGGTCGATGCTGAGGTTCTGGCCAAGATGGTTCTGTTGGGAATCCAAGGGAATAGTGTTAGGAGTGTTGTTCACACTCTCAACAGAGTGCAGGATCACTCAGTTTCTCTAGCTTCTCATCTTAATGGCTCTTCCATCGATGCCATTGCGAAGGAGTGTTGCCGATTGGTCATGTGCGGCCACATTGAGGAGGCTGTCGAACTCATGGAGGTTCTCACACGTTTCAAGATATCAATCAGGGGATTTGTTCAGCCATCTGACGTAATTAAACGCTGTGTTCTTAGTCGGAATCCAATTTTAGCTGTTAGGTATGCATGTCTTCTTCCCCATGCACAGATATTGTTCTGCAGTATAATATCAGAATTTGGCAAAAGGAGGGATTTGATTTCTGCTTTTAAAGCATATGAGCTGTCGAAGAAACACATGAATATTCCCAATATGTACATGTACCGGGCAATAATTGATGCTTGTGGTCTATGTCGTGATTACATGAAATCTAGGTACATATATGAGGATTTGCTTAATCAGAAGATTACTCCAAATATATACGTTTTCAACAGCCTCATGAATGTGAATGCCCATGATCTTAGCTACACATTAAATCTATATCAAAATATGCAGAATCTTGGTTTAAAACCAGATATGACATCTTATAACATCCTACTGAAAGGATGCTGTGTTGCTGGAAGAGTTGATCTGGCTCAAGACATTTATAGGGAACTTAAGCATTTGGAATCAGTGGGACAGCTAAAATTAGATGTCTTTACCTACAGCACAATTATAAAGGTCTTTGCAGATGCGAGGTTGTGGCAGATGGCTCTAACAATCAAGCAAGACATGCTTTCTGCTGGTGTTTCTCTCAATATTGTTGCATGGTCATCATTAATCAACGCCTGTGCACATGCAGGGCTTGTAGAGCAGGCAATTCAGTTATTTGAAGAAATGCTTTTGGCTGGCCGTGAGCCTAATACTCAGTGTTTCAACATCATTTTAAATGCGTGTGTTGAAGCTTGCCAATATGACAGGGCTTTTCGCTTTTTCCATTCTTGGAAGGGAAAAAAGATGTTAGGGTCATTTGGTGAAGGCTGCAACAACAATACACGGCAGGAACTTGTGCATAATGTTACTACTGTACCAAATGGCATTTCTAATTCACACATCTTGAGTTTTGCTGAGAGGTTCCCTTTCACACCAACTACCACAACATACAATATTTTACTCAAGGCCTGTGGTACTGATTATTACCATGCAAAAGCATTAATCAAAGAGATGGAAACAGTAGGCCTTTCCCCTAATCAAATTAGCTGGTCGACTTTGATAGATATATGTGGAGCATCAGCAAACGTGGAGGGTGCCATTGAGATTTTGAAAAACATGGGTGATGCTGGAATTAAACCTGATGTCATTGCATATACAACAGCCATTAAGGTTTGTGTTGAAAGTAAGAATTTTATGCAAGCGTTAGCATTATATAAAGAAATGAAAAGCTACCATATACGTCCAAATTTGATAACATACAACACACTTCTGAAGGCACGCAGTAAATATGGCTCCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGGTATAAACCCAATGACTGCTATCTGGAAGAATTGATTGAGGAATGGTGTGAAGGAGTAATACAAGATAACAGAGAGATTCAAGGAGAATTTTCTTCCAGCAATAAATCTGAATTAGAGAAATCCCAAAGTCTACTTCTTGAAAAAATTGCAGCTCACCTGCTAAAGAGGGTAGCTGACATCCTAGCAATTGATGTTCAAGGTCTAACAAAGGTTGAAGCTCGTTTGGTTGTTCTTGCAGTTCTTCGGATGATCAAAGAGAATTACAGTTTAGGACATTCAATAAATGATGATATCCTGATCGTCATAGGAGCTACTAAAGTAGACGAAAATCCGGCTAAACGCATATTAGAAGTGCAAGAAGCAATACTAAAACTTCTTAGAAATGAGTTGGGGCTGGAAGCTTTTCCTGCCAGAACCAGATTAGCACTAAGTGACACACCAAAGTTAAAGAACCCCACCCTTGCAAATCTCAAAATAGAAGCAGTACCAGCAGAGGATGCATTACCCACATCAATGGGGTTTCAGACCAGGAGACCTGGAATTCTAGTGAGGTTGAAGATCACCAGAAAATCATTATACAGTTGGTTGCACAGGAAGTAA 2430 0.4119 MRDFVILGSSVATPFPSSSSAAPHRYPIKPSLPKLAPFSSSWNISCALQAPLSLSADSKLVEEFEVVDGDAIDSGVDAEVLAKMVLLGIQGNSVRSVVHTLNRVQDHSVSLASHLNGSSIDAIAKECCRLVMCGHIEEAVELMEVLTRFKISIRGFVQPSDVIKRCVLSRNPILAVRYACLLPHAQILFCSIISEFGKRRDLISAFKAYELSKKHMNIPNMYMYRAIIDACGLCRDYMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDLSYTLNLYQNMQNLGLKPDMTSYNILLKGCCVAGRVDLAQDIYRELKHLESVGQLKLDVFTYSTIIKVFADARLWQMALTIKQDMLSAGVSLNIVAWSSLINACAHAGLVEQAIQLFEEMLLAGREPNTQCFNIILNACVEACQYDRAFRFFHSWKGKKMLGSFGEGCNNNTRQELVHNVTTVPNGISNSHILSFAERFPFTPTTTTYNILLKACGTDYYHAKALIKEMETVGLSPNQISWSTLIDICGASANVEGAIEILKNMGDAGIKPDVIAYTTAIKVCVESKNFMQALALYKEMKSYHIRPNLITYNTLLKARSKYGSLHEVQQCLAIYQDMRKAGYKPNDCYLEELIEEWCEGVIQDNREIQGEFSSSNKSELEKSQSLLLEKIAAHLLKRVADILAIDVQGLTKVEARLVVLAVLRMIKENYSLGHSINDDILIVIGATKVDENPAKRILEVQEAILKLLRNELGLEAFPARTRLALSDTPKLKNPTLANLKIEAVPAEDALPTSMGFQTRRPGILVRLKITRKSLYSWLHRK* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1803 809 Pfam PPR repeat 329 359 IPR002885 -
Pvu1g1803 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 613 IPR002885 -
Pvu1g1803 809 TIGRFAM PPR: pentatricopeptide repeat domain 508 542 IPR002885 -
Pvu1g1803 809 TIGRFAM PPR: pentatricopeptide repeat domain 364 398 IPR002885 -
Pvu1g1803 809 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Pvu1g1803 809 TIGRFAM PPR: pentatricopeptide repeat domain 544 576 IPR002885 -
Pvu1g1803 809 TIGRFAM PPR: pentatricopeptide repeat domain 400 427 IPR002885 -
Pvu1g1803 809 TIGRFAM PPR: pentatricopeptide repeat domain 291 316 IPR002885 -
Pvu1g1803 809 Pfam Pentatricopeptide repeat domain 219 265 IPR002885 -
Pvu1g1803 809 Pfam Pentatricopeptide repeat domain 529 586 IPR002885 -
Pvu1g1803 809 Pfam Pentatricopeptide repeat domain 476 518 IPR002885 -
Pvu1g1803 809 Pfam PPR repeat 284 314 IPR002885 -
Pvu1g1803 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Pvu1g1803 809 PANTHER OS03G0284900 PROTEIN 61 801 - -
Pvu1g1803 809 Gene3D Tetratricopeptide repeat domain 186 318 IPR011990 GO:0005515
Pvu1g1803 809 Gene3D Tetratricopeptide repeat domain 319 453 IPR011990 GO:0005515
Pvu1g1803 809 Gene3D Tetratricopeptide repeat domain 459 662 IPR011990 GO:0005515
Pvu1g1803 809 Pfam PPR repeat family 362 409 IPR002885 -
Pvu1g1803 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 318 IPR002885 -
Pvu1g1803 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Pvu1g1803 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Pvu1g1803 809 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 61 801 - -
Pvu1g1803 809 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1803 Pvu-Chr1 43688076 43696880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1803 219 627 Glycosyltransferase AT1G05670 22.410 4.31e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1803 - - gmx:100794606 1336.63