Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1797 ATGATCATTCAAAACCAAATTCGATGTCTATATAATTGTGCAAGACCTATTGTGTCAACAAGAGTAGTCTCCAGTCTCAGTACAGAGTTATCAACCAACAGTTACATCAACTTGATGTGCAAGCAACAGCACTACAAAGAAGCACTTGATGCATTTAATTTCAATCTAAAGAAATCAGGTATCCAGCTAGAACCAAGCACCTATGCGAATCTAATATTGGCCTGTACCAACGTTAGATCTCTAAATTACGGCAAGAAAATCCATGAACACATTTCAAAATCCAACTGTCAGCCAGACCTTGTTCTCCAAAATCATATTCTTAATATGTATGGAAAATGTGGTTCTTCGAAAGATGCTAGAAAACTTTTTGATGCAATGCAGCTGCGTAATGTGGTCTCCTGGACTATAATGATCTCCGGATACATGCAGAATGATCAAGAGAATGATGCCATCACAATGTATATTCAAATGCTGCGATCAGGTTATCTCCCTGACCAGTTTACATTTGGAAGCATTATTAAGGTTTGCTGCATTGTGGGAGATATAGACTTTGGCAGACAACTTCATGCTCATGTCATTAAATCAGGGTATGATCATCACTTAATTGCACAAAACGCTCTTATCTCCATGTATACAAAGTTTGGACAAATTGCACATGCCTCAGGTGTGTTTGCGATGATTTCCACAAAGGATTTAATTTCGTATGCTTCTATGATTACAGGGTTTACACAACTTGGTAATGACATAGAAGCTTTATATCTTTTCAGAGATATGCTCAGGCAATCTGTTTATCAACCAAATGAGTTTATATTTGGCAGTGTATTCAGTGCTTGTGGAAGCCTTCTAGAACCAGAATTTGGAAGGCAAATTCATGGAGTGTGCGCCAAATTTGGTTTAGGGAGGAACATTTTTGCTGGGTGCTCCCTCTGTGACATGTATGCAAAATTTGGATTCTTACCTTCGGCAGAAAGGGTATTTTATCAAATTGAAAGCCCGGATTTAGTGTCATGGAATGCAATTATTGCAGCATTTTCTGATAGTGGTCATGTTAATGAAGCCGTATCATTTTTCTGCCAGATGATGCATACGGGACTGATGCCAGATAACATTACTTTTCTCTCCTTACTCTGTCCTTGTGGGAGCTTTGTGACACGTAACCAAGGCATGCAAATACATTCTTACATTATTAAAATAGGTTTAGACAATGAAGCAGCTGTATGCAACTCTTTACTGACAATGTACACAAAGTGTTCAAATCTACATGATGCATTCAATGTTTTCACATATTTGGGTAGAAGAGCCAATTTAGTTTCTTGGAATGCAATTCTATCAGCATGCTTACAGCACAAACATGCAGGAGAGGCTTTTAGATTATTTAAGCTAATGCTCTTTTCTGAAAATAAGCCTGACAATATCACCATAACTACCATATTAGGAACTTGTGCAGAATTGGCATCTCTAGTAGTTGGGAATCAAGTCCATTGCTTTACTGTCAAAAGTGGGCTAGTGGTTGATGTTTCCGTCAGCAATAGATTGATTGACATGTATGCAAAGTGTGGATCACTTAAACATGCTCGTGATGTTTTTGATTCAACCCAGAACCCGGATATTGTCTCGTGGAGTAGTTTAATTGTTGGCTATGCTCAGTTTGGACTTGGACATGAAGCTCTTGATCTCTTTAGAATGATGAAGAATCTTGGTGTCCAGCCTAATGAGGTCACATATCTGGGGGTTCTCAGTGCATGCAGTCACATTGGATTGGTGGAGGAAGGTTGGCACTTGTATAAAACCATGGAAGTGGAACTAGGTATTGCACCAACAAGAGAGCATGTTTCTTGCATGGTTGATTTGCTTGCTCGTGCTGGATGCTTGTATGAAGCAGAAAAATTTATTAAGGAAACGGGATTTGAGCCTGACATTACTACATGGAAAACTCTACTTGCTTCCTGTAAAACTCGTGGTAATGTTGACATTGCAGAACGAGCTGCAGAAAATATACTAAAACTTGATCCTTGCAATTCAGCTGCTCTAGTGCTACTTTCTAATATACATGCTTCTGCCGGCAACTGGAAAGAAGTTGCGAGACTACGGCATTTGATGAAAGAAATGGGTGTACAGAAGGTTCCTGGTCAAAGTTGGATAGAATTTAAGGATCAGATCCACGTGTTCTTCTCAGAAGACAGTTCTCATCCACAGAGCGCCAAAATCTACACTATGCTGGAAGATTTATGGTTGCAGATGCTGGATCAAGGTTATGACCCTTGTCAGAGGTTAGACGTTAGCATTTGGTAG 2292 0.3935 MIIQNQIRCLYNCARPIVSTRVVSSLSTELSTNSYINLMCKQQHYKEALDAFNFNLKKSGIQLEPSTYANLILACTNVRSLNYGKKIHEHISKSNCQPDLVLQNHILNMYGKCGSSKDARKLFDAMQLRNVVSWTIMISGYMQNDQENDAITMYIQMLRSGYLPDQFTFGSIIKVCCIVGDIDFGRQLHAHVIKSGYDHHLIAQNALISMYTKFGQIAHASGVFAMISTKDLISYASMITGFTQLGNDIEALYLFRDMLRQSVYQPNEFIFGSVFSACGSLLEPEFGRQIHGVCAKFGLGRNIFAGCSLCDMYAKFGFLPSAERVFYQIESPDLVSWNAIIAAFSDSGHVNEAVSFFCQMMHTGLMPDNITFLSLLCPCGSFVTRNQGMQIHSYIIKIGLDNEAAVCNSLLTMYTKCSNLHDAFNVFTYLGRRANLVSWNAILSACLQHKHAGEAFRLFKLMLFSENKPDNITITTILGTCAELASLVVGNQVHCFTVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFDSTQNPDIVSWSSLIVGYAQFGLGHEALDLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHLYKTMEVELGIAPTREHVSCMVDLLARAGCLYEAEKFIKETGFEPDITTWKTLLASCKTRGNVDIAERAAENILKLDPCNSAALVLLSNIHASAGNWKEVARLRHLMKEMGVQKVPGQSWIEFKDQIHVFFSEDSSHPQSAKIYTMLEDLWLQMLDQGYDPCQRLDVSIW* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1797 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Pvu1g1797 763 Gene3D Tetratricopeptide repeat domain 28 182 IPR011990 GO:0005515
Pvu1g1797 763 Gene3D Tetratricopeptide repeat domain 383 493 IPR011990 GO:0005515
Pvu1g1797 763 Pfam PPR repeat 233 261 IPR002885 -
Pvu1g1797 763 Pfam PPR repeat 510 530 IPR002885 -
Pvu1g1797 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Pvu1g1797 763 TIGRFAM PPR: pentatricopeptide repeat domain 132 165 IPR002885 -
Pvu1g1797 763 TIGRFAM PPR: pentatricopeptide repeat domain 437 470 IPR002885 -
Pvu1g1797 763 TIGRFAM PPR: pentatricopeptide repeat domain 573 607 IPR002885 -
Pvu1g1797 763 TIGRFAM PPR: pentatricopeptide repeat domain 233 267 IPR002885 -
Pvu1g1797 763 TIGRFAM PPR: pentatricopeptide repeat domain 335 368 IPR002885 -
Pvu1g1797 763 TIGRFAM PPR: pentatricopeptide repeat domain 538 572 IPR002885 -
Pvu1g1797 763 Pfam PPR repeat family 435 482 IPR002885 -
Pvu1g1797 763 Pfam PPR repeat family 535 583 IPR002885 -
Pvu1g1797 763 Pfam PPR repeat family 129 177 IPR002885 -
Pvu1g1797 763 Pfam PPR repeat family 332 376 IPR002885 -
Pvu1g1797 763 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 156 462 - -
Pvu1g1797 763 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 264 727 - -
Pvu1g1797 763 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 379 - -
Pvu1g1797 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Pvu1g1797 763 Gene3D Tetratricopeptide repeat domain 183 283 IPR011990 GO:0005515
Pvu1g1797 763 Gene3D Tetratricopeptide repeat domain 494 585 IPR011990 GO:0005515
Pvu1g1797 763 Gene3D Tetratricopeptide repeat domain 586 711 IPR011990 GO:0005515
Pvu1g1797 763 Gene3D Tetratricopeptide repeat domain 284 382 IPR011990 GO:0005515
Pvu1g1797 763 Pfam Pentatricopeptide repeat domain 55 112 IPR002885 -
Pvu1g1797 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Pvu1g1797 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Pvu1g1797 763 Pfam E motif 655 715 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1797 Pvu-Chr1 43655108 43657399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1797 56 754 Glycoside Hydrolase AT3G49170 34.789 2.00e-145 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1797 - - gmx:100810873 1362.05